Experiment: R2A with nitrite 9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0034 and Atu0035 are separated by 338 nucleotides Atu0035 and Atu0036 are separated by 127 nucleotides Atu0036 and Atu0037 are separated by 19 nucleotides
Atu0034: Atu0034 - two component response regulator, at 36,525 to 37,250
Atu0034
Atu0035: Atu0035 - phosphoenolpyruvate carboxykinase, at 37,589 to 39,199
Atu0035
Atu0036: Atu0036 - hypothetical protein, at 39,327 to 39,761
Atu0036
Atu0037: Atu0037 - pantothenate kinase, at 39,781 to 40,749
Atu0037
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 37.299 kb on + strand at 37.312 kb on - strand at 37.572 kb on + strand at 37.885 kb on + strand, within Atu0035 at 38.006 kb on + strand, within Atu0035 at 38.014 kb on - strand, within Atu0035 at 38.105 kb on - strand, within Atu0035 at 38.105 kb on - strand, within Atu0035 at 38.153 kb on - strand, within Atu0035 at 38.321 kb on - strand, within Atu0035 at 38.329 kb on - strand, within Atu0035 at 38.406 kb on + strand, within Atu0035 at 38.551 kb on - strand, within Atu0035 at 38.564 kb on - strand, within Atu0035 at 38.572 kb on - strand, within Atu0035 at 38.637 kb on - strand, within Atu0035 at 38.664 kb on - strand, within Atu0035 at 38.944 kb on - strand, within Atu0035 at 39.085 kb on - strand at 39.133 kb on + strand at 39.153 kb on - strand at 39.302 kb on + strand at 39.364 kb on - strand at 39.569 kb on + strand, within Atu0036 at 39.585 kb on - strand, within Atu0036 at 39.642 kb on + strand, within Atu0036
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 9 mM remove 37,299 + +0.0 37,312 - +1.7 37,572 + +0.5 37,885 + Atu0035 0.18 -0.3 38,006 + Atu0035 0.26 -1.4 38,014 - Atu0035 0.26 -0.6 38,105 - Atu0035 0.32 +0.0 38,105 - Atu0035 0.32 +0.0 38,153 - Atu0035 0.35 -0.1 38,321 - Atu0035 0.45 +0.1 38,329 - Atu0035 0.46 -0.1 38,406 + Atu0035 0.51 -0.0 38,551 - Atu0035 0.60 +1.1 38,564 - Atu0035 0.61 -1.0 38,572 - Atu0035 0.61 -0.0 38,637 - Atu0035 0.65 -0.2 38,664 - Atu0035 0.67 -0.4 38,944 - Atu0035 0.84 +0.7 39,085 - +0.1 39,133 + +0.1 39,153 - +0.2 39,302 + +0.5 39,364 - -2.1 39,569 + Atu0036 0.56 -0.8 39,585 - Atu0036 0.59 -0.8 39,642 + Atu0036 0.72 -1.0
Or see this region's nucleotide sequence