Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_839 and PfGW456L13_840 are separated by 101 nucleotides PfGW456L13_840 and PfGW456L13_841 are separated by 186 nucleotides PfGW456L13_841 and PfGW456L13_842 overlap by 4 nucleotides PfGW456L13_842 and PfGW456L13_843 are separated by 2 nucleotides
PfGW456L13_839 - FIG004064: hypothetical protein, at 948,043 to 948,468
_839
PfGW456L13_840 - FIG00953808: hypothetical protein, at 948,570 to 948,893
_840
PfGW456L13_841 - Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase, at 949,080 to 949,787
_841
PfGW456L13_842 - Tyrosine recombinase XerC, at 949,784 to 950,683
_842
PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411
_843
Position (kb)
949
950 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 948.098 kb on + strand, within PfGW456L13_839 at 948.110 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.175 kb on - strand, within PfGW456L13_839 at 948.175 kb on - strand, within PfGW456L13_839 at 948.219 kb on - strand, within PfGW456L13_839 at 948.275 kb on - strand, within PfGW456L13_839 at 948.397 kb on + strand, within PfGW456L13_839 at 948.397 kb on + strand, within PfGW456L13_839 at 948.532 kb on + strand at 948.532 kb on + strand at 948.532 kb on + strand at 948.533 kb on - strand at 948.533 kb on - strand at 948.533 kb on - strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.539 kb on - strand at 948.539 kb on - strand at 948.564 kb on + strand at 948.564 kb on + strand at 948.564 kb on + strand at 948.565 kb on - strand at 948.565 kb on - strand at 948.565 kb on - strand at 948.565 kb on - strand at 948.607 kb on + strand, within PfGW456L13_840 at 948.873 kb on + strand at 948.873 kb on + strand at 948.874 kb on - strand at 948.888 kb on - strand at 948.908 kb on + strand at 949.026 kb on + strand at 949.026 kb on + strand at 949.026 kb on + strand at 949.026 kb on + strand at 949.027 kb on - strand at 949.039 kb on - strand at 949.039 kb on - strand at 949.363 kb on + strand, within PfGW456L13_841 at 949.364 kb on - strand, within PfGW456L13_841 at 949.364 kb on - strand, within PfGW456L13_841 at 949.497 kb on + strand, within PfGW456L13_841 at 949.498 kb on - strand, within PfGW456L13_841 at 949.498 kb on - strand, within PfGW456L13_841 at 949.781 kb on + strand at 949.781 kb on + strand at 949.782 kb on - strand at 949.833 kb on + strand at 949.834 kb on - strand at 949.869 kb on + strand at 949.869 kb on + strand at 949.869 kb on + strand at 949.870 kb on - strand at 949.870 kb on - strand at 949.870 kb on - strand at 950.147 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.262 kb on + strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.263 kb on - strand, within PfGW456L13_842 at 950.436 kb on + strand, within PfGW456L13_842 at 950.442 kb on + strand, within PfGW456L13_842 at 950.442 kb on + strand, within PfGW456L13_842 at 950.443 kb on - strand, within PfGW456L13_842 at 950.443 kb on - strand, within PfGW456L13_842 at 950.465 kb on + strand, within PfGW456L13_842 at 950.661 kb on + strand at 950.662 kb on - strand at 950.692 kb on + strand at 950.750 kb on + strand at 950.750 kb on + strand at 950.750 kb on + strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.751 kb on - strand at 950.784 kb on - strand, within PfGW456L13_843 at 950.784 kb on - strand, within PfGW456L13_843
Per-strain Table
Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x remove 948,098 + PfGW456L13_839 0.13 -1.5 948,110 + PfGW456L13_839 0.16 -1.8 948,174 + PfGW456L13_839 0.31 -2.5 948,174 + PfGW456L13_839 0.31 -0.9 948,174 + PfGW456L13_839 0.31 -0.7 948,174 + PfGW456L13_839 0.31 +0.1 948,174 + PfGW456L13_839 0.31 +1.3 948,175 - PfGW456L13_839 0.31 +1.3 948,175 - PfGW456L13_839 0.31 -3.1 948,219 - PfGW456L13_839 0.41 -0.7 948,275 - PfGW456L13_839 0.54 -1.5 948,397 + PfGW456L13_839 0.83 -0.1 948,397 + PfGW456L13_839 0.83 -0.9 948,532 + +0.1 948,532 + -1.5 948,532 + +0.1 948,533 - -1.1 948,533 - -2.5 948,533 - -2.1 948,534 + -0.5 948,534 + +1.4 948,534 + -1.1 948,534 + +0.1 948,534 + -2.7 948,534 + -0.8 948,534 + -1.2 948,535 - +0.5 948,535 - +0.8 948,535 - -0.7 948,535 - +0.1 948,535 - +0.4 948,535 - +0.1 948,538 + -0.6 948,538 + -0.7 948,538 + -1.1 948,538 + -0.2 948,538 + -1.1 948,538 + -0.5 948,539 - -1.9 948,539 - -0.9 948,564 + -0.9 948,564 + +0.1 948,564 + -0.9 948,565 - +0.1 948,565 - +1.7 948,565 - +2.4 948,565 - +0.1 948,607 + PfGW456L13_840 0.11 -0.9 948,873 + +0.7 948,873 + +0.3 948,874 - -0.9 948,888 - +0.1 948,908 + -0.2 949,026 + -0.0 949,026 + -0.2 949,026 + -1.2 949,026 + +2.7 949,027 - +0.3 949,039 - -0.5 949,039 - -0.2 949,363 + PfGW456L13_841 0.40 +0.1 949,364 - PfGW456L13_841 0.40 -1.2 949,364 - PfGW456L13_841 0.40 +0.7 949,497 + PfGW456L13_841 0.59 +0.7 949,498 - PfGW456L13_841 0.59 -0.0 949,498 - PfGW456L13_841 0.59 -0.7 949,781 + -1.7 949,781 + -0.2 949,782 - -0.3 949,833 + +1.1 949,834 - +0.5 949,869 + +3.4 949,869 + +2.7 949,869 + -0.2 949,870 - +0.1 949,870 - +2.1 949,870 - -0.9 950,147 + PfGW456L13_842 0.40 +0.1 950,262 + PfGW456L13_842 0.53 -0.2 950,262 + PfGW456L13_842 0.53 +0.1 950,262 + PfGW456L13_842 0.53 -0.9 950,262 + PfGW456L13_842 0.53 -0.9 950,262 + PfGW456L13_842 0.53 -1.4 950,263 - PfGW456L13_842 0.53 +1.7 950,263 - PfGW456L13_842 0.53 -0.2 950,263 - PfGW456L13_842 0.53 -2.7 950,263 - PfGW456L13_842 0.53 -1.2 950,263 - PfGW456L13_842 0.53 -0.7 950,436 + PfGW456L13_842 0.72 -1.2 950,442 + PfGW456L13_842 0.73 +0.1 950,442 + PfGW456L13_842 0.73 -0.2 950,443 - PfGW456L13_842 0.73 -1.2 950,443 - PfGW456L13_842 0.73 +0.7 950,465 + PfGW456L13_842 0.76 +1.1 950,661 + -1.2 950,662 - +1.9 950,692 + -0.8 950,750 + +0.6 950,750 + +1.7 950,750 + -0.2 950,751 - +0.1 950,751 - +0.6 950,751 - +0.1 950,751 - +1.3 950,751 - +0.3 950,751 - -1.2 950,751 - -1.9 950,751 - -1.8 950,784 - PfGW456L13_843 0.13 -0.5 950,784 - PfGW456L13_843 0.13 +1.1
Or see this region's nucleotide sequence