Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_841

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_839 and PfGW456L13_840 are separated by 101 nucleotidesPfGW456L13_840 and PfGW456L13_841 are separated by 186 nucleotidesPfGW456L13_841 and PfGW456L13_842 overlap by 4 nucleotidesPfGW456L13_842 and PfGW456L13_843 are separated by 2 nucleotides PfGW456L13_839 - FIG004064: hypothetical protein, at 948,043 to 948,468 _839 PfGW456L13_840 - FIG00953808: hypothetical protein, at 948,570 to 948,893 _840 PfGW456L13_841 - Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase, at 949,080 to 949,787 _841 PfGW456L13_842 - Tyrosine recombinase XerC, at 949,784 to 950,683 _842 PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411 _843 Position (kb) 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 948.098 kb on + strand, within PfGW456L13_839at 948.110 kb on + strand, within PfGW456L13_839at 948.174 kb on + strand, within PfGW456L13_839at 948.174 kb on + strand, within PfGW456L13_839at 948.174 kb on + strand, within PfGW456L13_839at 948.174 kb on + strand, within PfGW456L13_839at 948.174 kb on + strand, within PfGW456L13_839at 948.175 kb on - strand, within PfGW456L13_839at 948.175 kb on - strand, within PfGW456L13_839at 948.219 kb on - strand, within PfGW456L13_839at 948.275 kb on - strand, within PfGW456L13_839at 948.397 kb on + strand, within PfGW456L13_839at 948.397 kb on + strand, within PfGW456L13_839at 948.532 kb on + strandat 948.532 kb on + strandat 948.532 kb on + strandat 948.533 kb on - strandat 948.533 kb on - strandat 948.533 kb on - strandat 948.534 kb on + strandat 948.534 kb on + strandat 948.534 kb on + strandat 948.534 kb on + strandat 948.534 kb on + strandat 948.534 kb on + strandat 948.534 kb on + strandat 948.535 kb on - strandat 948.535 kb on - strandat 948.535 kb on - strandat 948.535 kb on - strandat 948.535 kb on - strandat 948.535 kb on - strandat 948.538 kb on + strandat 948.538 kb on + strandat 948.538 kb on + strandat 948.538 kb on + strandat 948.538 kb on + strandat 948.538 kb on + strandat 948.539 kb on - strandat 948.539 kb on - strandat 948.564 kb on + strandat 948.564 kb on + strandat 948.564 kb on + strandat 948.565 kb on - strandat 948.565 kb on - strandat 948.565 kb on - strandat 948.565 kb on - strandat 948.607 kb on + strand, within PfGW456L13_840at 948.873 kb on + strandat 948.873 kb on + strandat 948.874 kb on - strandat 948.888 kb on - strandat 948.908 kb on + strandat 949.026 kb on + strandat 949.026 kb on + strandat 949.026 kb on + strandat 949.026 kb on + strandat 949.027 kb on - strandat 949.039 kb on - strandat 949.039 kb on - strandat 949.363 kb on + strand, within PfGW456L13_841at 949.364 kb on - strand, within PfGW456L13_841at 949.364 kb on - strand, within PfGW456L13_841at 949.497 kb on + strand, within PfGW456L13_841at 949.498 kb on - strand, within PfGW456L13_841at 949.498 kb on - strand, within PfGW456L13_841at 949.781 kb on + strandat 949.781 kb on + strandat 949.782 kb on - strandat 949.833 kb on + strandat 949.834 kb on - strandat 949.869 kb on + strandat 949.869 kb on + strandat 949.869 kb on + strandat 949.870 kb on - strandat 949.870 kb on - strandat 949.870 kb on - strandat 950.147 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.262 kb on + strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.263 kb on - strand, within PfGW456L13_842at 950.436 kb on + strand, within PfGW456L13_842at 950.442 kb on + strand, within PfGW456L13_842at 950.442 kb on + strand, within PfGW456L13_842at 950.443 kb on - strand, within PfGW456L13_842at 950.443 kb on - strand, within PfGW456L13_842at 950.465 kb on + strand, within PfGW456L13_842at 950.661 kb on + strandat 950.662 kb on - strandat 950.692 kb on + strandat 950.750 kb on + strandat 950.750 kb on + strandat 950.750 kb on + strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.751 kb on - strandat 950.784 kb on - strand, within PfGW456L13_843at 950.784 kb on - strand, within PfGW456L13_843

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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948,098 + PfGW456L13_839 0.13 -1.5
948,110 + PfGW456L13_839 0.16 -1.8
948,174 + PfGW456L13_839 0.31 -2.5
948,174 + PfGW456L13_839 0.31 -0.9
948,174 + PfGW456L13_839 0.31 -0.7
948,174 + PfGW456L13_839 0.31 +0.1
948,174 + PfGW456L13_839 0.31 +1.3
948,175 - PfGW456L13_839 0.31 +1.3
948,175 - PfGW456L13_839 0.31 -3.1
948,219 - PfGW456L13_839 0.41 -0.7
948,275 - PfGW456L13_839 0.54 -1.5
948,397 + PfGW456L13_839 0.83 -0.1
948,397 + PfGW456L13_839 0.83 -0.9
948,532 + +0.1
948,532 + -1.5
948,532 + +0.1
948,533 - -1.1
948,533 - -2.5
948,533 - -2.1
948,534 + -0.5
948,534 + +1.4
948,534 + -1.1
948,534 + +0.1
948,534 + -2.7
948,534 + -0.8
948,534 + -1.2
948,535 - +0.5
948,535 - +0.8
948,535 - -0.7
948,535 - +0.1
948,535 - +0.4
948,535 - +0.1
948,538 + -0.6
948,538 + -0.7
948,538 + -1.1
948,538 + -0.2
948,538 + -1.1
948,538 + -0.5
948,539 - -1.9
948,539 - -0.9
948,564 + -0.9
948,564 + +0.1
948,564 + -0.9
948,565 - +0.1
948,565 - +1.7
948,565 - +2.4
948,565 - +0.1
948,607 + PfGW456L13_840 0.11 -0.9
948,873 + +0.7
948,873 + +0.3
948,874 - -0.9
948,888 - +0.1
948,908 + -0.2
949,026 + -0.0
949,026 + -0.2
949,026 + -1.2
949,026 + +2.7
949,027 - +0.3
949,039 - -0.5
949,039 - -0.2
949,363 + PfGW456L13_841 0.40 +0.1
949,364 - PfGW456L13_841 0.40 -1.2
949,364 - PfGW456L13_841 0.40 +0.7
949,497 + PfGW456L13_841 0.59 +0.7
949,498 - PfGW456L13_841 0.59 -0.0
949,498 - PfGW456L13_841 0.59 -0.7
949,781 + -1.7
949,781 + -0.2
949,782 - -0.3
949,833 + +1.1
949,834 - +0.5
949,869 + +3.4
949,869 + +2.7
949,869 + -0.2
949,870 - +0.1
949,870 - +2.1
949,870 - -0.9
950,147 + PfGW456L13_842 0.40 +0.1
950,262 + PfGW456L13_842 0.53 -0.2
950,262 + PfGW456L13_842 0.53 +0.1
950,262 + PfGW456L13_842 0.53 -0.9
950,262 + PfGW456L13_842 0.53 -0.9
950,262 + PfGW456L13_842 0.53 -1.4
950,263 - PfGW456L13_842 0.53 +1.7
950,263 - PfGW456L13_842 0.53 -0.2
950,263 - PfGW456L13_842 0.53 -2.7
950,263 - PfGW456L13_842 0.53 -1.2
950,263 - PfGW456L13_842 0.53 -0.7
950,436 + PfGW456L13_842 0.72 -1.2
950,442 + PfGW456L13_842 0.73 +0.1
950,442 + PfGW456L13_842 0.73 -0.2
950,443 - PfGW456L13_842 0.73 -1.2
950,443 - PfGW456L13_842 0.73 +0.7
950,465 + PfGW456L13_842 0.76 +1.1
950,661 + -1.2
950,662 - +1.9
950,692 + -0.8
950,750 + +0.6
950,750 + +1.7
950,750 + -0.2
950,751 - +0.1
950,751 - +0.6
950,751 - +0.1
950,751 - +1.3
950,751 - +0.3
950,751 - -1.2
950,751 - -1.9
950,751 - -1.8
950,784 - PfGW456L13_843 0.13 -0.5
950,784 - PfGW456L13_843 0.13 +1.1

Or see this region's nucleotide sequence