Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_688

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_687 and PfGW456L13_688 overlap by 11 nucleotidesPfGW456L13_688 and PfGW456L13_689 overlap by 8 nucleotides PfGW456L13_687 - Membrane protein, putative, at 779,528 to 780,553 _687 PfGW456L13_688 - Membrane fusion component of tripartite multidrug resistance system, at 780,543 to 781,661 _688 PfGW456L13_689 - RND efflux system, outer membrane lipoprotein, NodT, at 781,654 to 783,165 _689 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2at 779.589 kb on + strandat 779.589 kb on + strandat 779.589 kb on + strandat 779.589 kb on + strandat 779.589 kb on + strandat 779.590 kb on - strandat 779.590 kb on - strandat 779.590 kb on - strandat 779.590 kb on - strandat 779.590 kb on - strandat 779.590 kb on - strandat 779.590 kb on - strandat 779.603 kb on + strandat 779.603 kb on + strandat 779.604 kb on - strandat 779.637 kb on + strand, within PfGW456L13_687at 779.638 kb on - strand, within PfGW456L13_687at 779.638 kb on - strand, within PfGW456L13_687at 779.638 kb on - strand, within PfGW456L13_687at 779.955 kb on + strand, within PfGW456L13_687at 779.955 kb on + strand, within PfGW456L13_687at 779.956 kb on - strand, within PfGW456L13_687at 779.997 kb on - strand, within PfGW456L13_687at 780.043 kb on + strand, within PfGW456L13_687at 780.044 kb on - strand, within PfGW456L13_687at 780.281 kb on + strand, within PfGW456L13_687at 780.281 kb on + strand, within PfGW456L13_687at 780.282 kb on - strand, within PfGW456L13_687at 780.282 kb on - strand, within PfGW456L13_687at 780.288 kb on - strand, within PfGW456L13_687at 780.312 kb on + strand, within PfGW456L13_687at 780.315 kb on + strand, within PfGW456L13_687at 780.316 kb on - strand, within PfGW456L13_687at 780.361 kb on + strand, within PfGW456L13_687at 780.361 kb on + strand, within PfGW456L13_687at 780.361 kb on + strand, within PfGW456L13_687at 780.362 kb on - strand, within PfGW456L13_687at 780.362 kb on - strand, within PfGW456L13_687at 780.547 kb on + strandat 780.548 kb on - strandat 780.548 kb on - strandat 780.553 kb on + strandat 780.553 kb on + strandat 780.554 kb on - strandat 780.609 kb on - strandat 780.609 kb on - strandat 780.609 kb on - strandat 780.793 kb on + strand, within PfGW456L13_688at 780.803 kb on + strand, within PfGW456L13_688at 781.025 kb on + strand, within PfGW456L13_688at 781.026 kb on - strand, within PfGW456L13_688at 781.182 kb on + strand, within PfGW456L13_688at 781.183 kb on - strand, within PfGW456L13_688at 781.183 kb on - strand, within PfGW456L13_688at 781.226 kb on - strand, within PfGW456L13_688at 781.425 kb on + strand, within PfGW456L13_688at 781.425 kb on + strand, within PfGW456L13_688at 781.425 kb on + strand, within PfGW456L13_688at 781.425 kb on + strand, within PfGW456L13_688at 781.426 kb on - strand, within PfGW456L13_688at 781.426 kb on - strand, within PfGW456L13_688at 781.426 kb on - strand, within PfGW456L13_688at 781.426 kb on - strand, within PfGW456L13_688at 781.426 kb on - strand, within PfGW456L13_688at 781.426 kb on - strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.443 kb on + strand, within PfGW456L13_688at 781.444 kb on - strand, within PfGW456L13_688at 781.444 kb on - strand, within PfGW456L13_688at 781.488 kb on + strand, within PfGW456L13_688at 781.489 kb on - strand, within PfGW456L13_688at 781.522 kb on + strand, within PfGW456L13_688at 781.523 kb on - strand, within PfGW456L13_688at 781.549 kb on + strand, within PfGW456L13_688at 781.757 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.781 kb on + strandat 781.782 kb on - strandat 781.782 kb on - strandat 781.782 kb on - strandat 781.782 kb on - strandat 781.782 kb on - strandat 781.782 kb on - strandat 781.782 kb on - strandat 781.784 kb on - strandat 781.784 kb on - strandat 781.784 kb on - strandat 781.826 kb on + strand, within PfGW456L13_689at 781.826 kb on + strand, within PfGW456L13_689at 781.826 kb on + strand, within PfGW456L13_689at 781.826 kb on + strand, within PfGW456L13_689at 781.826 kb on + strand, within PfGW456L13_689at 781.826 kb on + strand, within PfGW456L13_689at 781.826 kb on + strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.827 kb on - strand, within PfGW456L13_689at 781.830 kb on + strand, within PfGW456L13_689at 781.830 kb on + strand, within PfGW456L13_689at 782.036 kb on + strand, within PfGW456L13_689at 782.036 kb on + strand, within PfGW456L13_689at 782.036 kb on + strand, within PfGW456L13_689at 782.037 kb on - strand, within PfGW456L13_689at 782.037 kb on - strand, within PfGW456L13_689at 782.214 kb on - strand, within PfGW456L13_689at 782.214 kb on - strand, within PfGW456L13_689at 782.347 kb on + strand, within PfGW456L13_689at 782.454 kb on + strand, within PfGW456L13_689at 782.454 kb on + strand, within PfGW456L13_689at 782.455 kb on - strand, within PfGW456L13_689at 782.455 kb on - strand, within PfGW456L13_689at 782.455 kb on - strand, within PfGW456L13_689at 782.455 kb on - strand, within PfGW456L13_689at 782.471 kb on + strand, within PfGW456L13_689at 782.543 kb on + strand, within PfGW456L13_689at 782.543 kb on + strand, within PfGW456L13_689at 782.543 kb on + strand, within PfGW456L13_689at 782.543 kb on + strand, within PfGW456L13_689at 782.544 kb on - strand, within PfGW456L13_689at 782.544 kb on - strand, within PfGW456L13_689at 782.612 kb on + strand, within PfGW456L13_689at 782.612 kb on + strand, within PfGW456L13_689at 782.612 kb on + strand, within PfGW456L13_689at 782.613 kb on - strand, within PfGW456L13_689at 782.613 kb on - strand, within PfGW456L13_689at 782.613 kb on - strand, within PfGW456L13_689at 782.615 kb on + strand, within PfGW456L13_689at 782.615 kb on + strand, within PfGW456L13_689at 782.615 kb on + strand, within PfGW456L13_689at 782.615 kb on + strand, within PfGW456L13_689at 782.615 kb on + strand, within PfGW456L13_689at 782.616 kb on - strand, within PfGW456L13_689at 782.616 kb on - strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.660 kb on + strand, within PfGW456L13_689at 782.661 kb on + strand, within PfGW456L13_689at 782.661 kb on - strand, within PfGW456L13_689at 782.661 kb on - strand, within PfGW456L13_689

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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779,589 + +0.5
779,589 + +0.9
779,589 + +0.2
779,589 + -1.7
779,589 + -0.7
779,590 - -0.5
779,590 - -1.9
779,590 - -0.6
779,590 - +1.2
779,590 - -1.0
779,590 - +0.1
779,590 - -0.4
779,603 + +0.1
779,603 + -0.8
779,604 - -0.2
779,637 + PfGW456L13_687 0.11 -0.3
779,638 - PfGW456L13_687 0.11 +0.6
779,638 - PfGW456L13_687 0.11 -0.7
779,638 - PfGW456L13_687 0.11 -0.6
779,955 + PfGW456L13_687 0.42 +0.3
779,955 + PfGW456L13_687 0.42 -0.5
779,956 - PfGW456L13_687 0.42 -0.8
779,997 - PfGW456L13_687 0.46 -0.0
780,043 + PfGW456L13_687 0.50 +0.8
780,044 - PfGW456L13_687 0.50 +0.8
780,281 + PfGW456L13_687 0.73 -1.6
780,281 + PfGW456L13_687 0.73 +1.0
780,282 - PfGW456L13_687 0.73 -0.3
780,282 - PfGW456L13_687 0.73 +0.0
780,288 - PfGW456L13_687 0.74 -0.6
780,312 + PfGW456L13_687 0.76 -0.5
780,315 + PfGW456L13_687 0.77 -0.6
780,316 - PfGW456L13_687 0.77 +0.4
780,361 + PfGW456L13_687 0.81 -0.4
780,361 + PfGW456L13_687 0.81 +0.5
780,361 + PfGW456L13_687 0.81 +0.7
780,362 - PfGW456L13_687 0.81 +0.6
780,362 - PfGW456L13_687 0.81 +0.5
780,547 + -0.9
780,548 - -0.2
780,548 - -0.9
780,553 + +0.2
780,553 + +0.4
780,554 - -1.0
780,609 - -0.1
780,609 - +0.3
780,609 - +0.3
780,793 + PfGW456L13_688 0.22 -0.2
780,803 + PfGW456L13_688 0.23 +0.4
781,025 + PfGW456L13_688 0.43 +1.5
781,026 - PfGW456L13_688 0.43 -0.5
781,182 + PfGW456L13_688 0.57 -0.7
781,183 - PfGW456L13_688 0.57 -0.8
781,183 - PfGW456L13_688 0.57 +0.2
781,226 - PfGW456L13_688 0.61 -0.2
781,425 + PfGW456L13_688 0.79 -2.6
781,425 + PfGW456L13_688 0.79 -2.2
781,425 + PfGW456L13_688 0.79 +0.6
781,425 + PfGW456L13_688 0.79 +0.5
781,426 - PfGW456L13_688 0.79 -0.5
781,426 - PfGW456L13_688 0.79 +0.1
781,426 - PfGW456L13_688 0.79 -0.4
781,426 - PfGW456L13_688 0.79 +1.3
781,426 - PfGW456L13_688 0.79 +2.2
781,426 - PfGW456L13_688 0.79 -0.5
781,443 + PfGW456L13_688 0.80 +0.1
781,443 + PfGW456L13_688 0.80 -1.3
781,443 + PfGW456L13_688 0.80 -1.3
781,443 + PfGW456L13_688 0.80 -0.1
781,443 + PfGW456L13_688 0.80 -2.0
781,443 + PfGW456L13_688 0.80 -1.0
781,443 + PfGW456L13_688 0.80 +0.5
781,443 + PfGW456L13_688 0.80 +0.5
781,443 + PfGW456L13_688 0.80 -0.5
781,444 - PfGW456L13_688 0.81 -0.5
781,444 - PfGW456L13_688 0.81 -1.7
781,488 + PfGW456L13_688 0.84 +0.5
781,489 - PfGW456L13_688 0.85 +0.1
781,522 + PfGW456L13_688 0.87 -0.3
781,523 - PfGW456L13_688 0.88 +0.1
781,549 + PfGW456L13_688 0.90 -0.5
781,757 + +0.6
781,781 + +0.4
781,781 + -1.0
781,781 + +0.2
781,781 + -0.0
781,781 + +1.4
781,781 + -0.1
781,781 + +0.3
781,781 + -0.4
781,781 + -0.6
781,781 + -0.4
781,782 - -2.5
781,782 - +1.7
781,782 - +0.2
781,782 - -2.7
781,782 - +0.6
781,782 - -0.5
781,782 - -0.2
781,784 - +0.7
781,784 - -0.5
781,784 - +0.9
781,826 + PfGW456L13_689 0.11 -0.6
781,826 + PfGW456L13_689 0.11 -0.6
781,826 + PfGW456L13_689 0.11 +1.3
781,826 + PfGW456L13_689 0.11 +0.6
781,826 + PfGW456L13_689 0.11 +0.6
781,826 + PfGW456L13_689 0.11 +0.7
781,826 + PfGW456L13_689 0.11 -0.2
781,827 - PfGW456L13_689 0.11 +1.2
781,827 - PfGW456L13_689 0.11 -0.5
781,827 - PfGW456L13_689 0.11 +0.6
781,827 - PfGW456L13_689 0.11 -0.4
781,827 - PfGW456L13_689 0.11 +0.1
781,827 - PfGW456L13_689 0.11 -0.3
781,827 - PfGW456L13_689 0.11 -1.6
781,827 - PfGW456L13_689 0.11 +2.0
781,827 - PfGW456L13_689 0.11 +1.4
781,830 + PfGW456L13_689 0.12 -0.1
781,830 + PfGW456L13_689 0.12 +1.1
782,036 + PfGW456L13_689 0.25 +0.8
782,036 + PfGW456L13_689 0.25 +1.6
782,036 + PfGW456L13_689 0.25 +0.7
782,037 - PfGW456L13_689 0.25 +0.5
782,037 - PfGW456L13_689 0.25 -0.0
782,214 - PfGW456L13_689 0.37 +0.5
782,214 - PfGW456L13_689 0.37 +0.3
782,347 + PfGW456L13_689 0.46 -1.2
782,454 + PfGW456L13_689 0.53 +0.4
782,454 + PfGW456L13_689 0.53 -0.1
782,455 - PfGW456L13_689 0.53 -0.3
782,455 - PfGW456L13_689 0.53 +1.5
782,455 - PfGW456L13_689 0.53 -0.9
782,455 - PfGW456L13_689 0.53 -0.4
782,471 + PfGW456L13_689 0.54 +1.8
782,543 + PfGW456L13_689 0.59 +0.4
782,543 + PfGW456L13_689 0.59 -0.7
782,543 + PfGW456L13_689 0.59 +0.2
782,543 + PfGW456L13_689 0.59 +0.1
782,544 - PfGW456L13_689 0.59 +1.2
782,544 - PfGW456L13_689 0.59 -0.8
782,612 + PfGW456L13_689 0.63 -0.5
782,612 + PfGW456L13_689 0.63 -0.2
782,612 + PfGW456L13_689 0.63 -0.6
782,613 - PfGW456L13_689 0.63 +1.5
782,613 - PfGW456L13_689 0.63 -0.5
782,613 - PfGW456L13_689 0.63 +0.6
782,615 + PfGW456L13_689 0.64 +0.4
782,615 + PfGW456L13_689 0.64 +0.4
782,615 + PfGW456L13_689 0.64 -0.9
782,615 + PfGW456L13_689 0.64 +0.1
782,615 + PfGW456L13_689 0.64 -0.2
782,616 - PfGW456L13_689 0.64 +2.1
782,616 - PfGW456L13_689 0.64 +0.1
782,660 + PfGW456L13_689 0.67 -0.1
782,660 + PfGW456L13_689 0.67 +0.0
782,660 + PfGW456L13_689 0.67 +0.7
782,660 + PfGW456L13_689 0.67 +0.1
782,660 + PfGW456L13_689 0.67 +0.6
782,660 + PfGW456L13_689 0.67 -0.8
782,660 + PfGW456L13_689 0.67 -0.9
782,660 + PfGW456L13_689 0.67 -0.0
782,660 + PfGW456L13_689 0.67 -2.6
782,660 + PfGW456L13_689 0.67 -1.0
782,660 + PfGW456L13_689 0.67 +0.5
782,661 + PfGW456L13_689 0.67 +0.1
782,661 - PfGW456L13_689 0.67 -0.3
782,661 - PfGW456L13_689 0.67 +0.4

Or see this region's nucleotide sequence