Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3935

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3934 and PfGW456L13_3935 are separated by 81 nucleotidesPfGW456L13_3935 and PfGW456L13_3936 are separated by 41 nucleotidesPfGW456L13_3936 and PfGW456L13_3937 are separated by 98 nucleotides PfGW456L13_3934 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 4,410,909 to 4,412,120 _3934 PfGW456L13_3935 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 4,412,202 to 4,413,707 _3935 PfGW456L13_3936 - Colicin V production protein, at 4,413,749 to 4,414,309 _3936 PfGW456L13_3937 - DedD protein, at 4,414,408 to 4,415,076 _3937 Position (kb) 4412 4413 4414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4411.231 kb on + strand, within PfGW456L13_3934at 4411.696 kb on + strand, within PfGW456L13_3934at 4411.697 kb on - strand, within PfGW456L13_3934at 4411.697 kb on - strand, within PfGW456L13_3934at 4411.727 kb on - strand, within PfGW456L13_3934at 4411.727 kb on - strand, within PfGW456L13_3934at 4411.758 kb on + strand, within PfGW456L13_3934at 4411.758 kb on + strand, within PfGW456L13_3934at 4411.759 kb on - strand, within PfGW456L13_3934at 4411.980 kb on + strand, within PfGW456L13_3934at 4411.980 kb on + strand, within PfGW456L13_3934at 4411.980 kb on + strand, within PfGW456L13_3934at 4411.980 kb on + strand, within PfGW456L13_3934at 4411.980 kb on + strand, within PfGW456L13_3934at 4411.980 kb on + strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.981 kb on - strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.984 kb on + strand, within PfGW456L13_3934at 4411.985 kb on - strand, within PfGW456L13_3934at 4411.985 kb on - strand, within PfGW456L13_3934at 4411.985 kb on - strand, within PfGW456L13_3934at 4411.985 kb on - strand, within PfGW456L13_3934at 4411.985 kb on - strand, within PfGW456L13_3934at 4412.030 kb on + strandat 4412.049 kb on + strandat 4412.070 kb on + strandat 4412.147 kb on + strandat 4412.147 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.151 kb on + strandat 4412.152 kb on - strandat 4412.152 kb on - strandat 4412.152 kb on - strandat 4412.152 kb on - strandat 4412.152 kb on - strandat 4412.152 kb on - strandat 4412.170 kb on + strandat 4412.171 kb on - strandat 4412.199 kb on + strandat 4412.199 kb on + strandat 4412.199 kb on + strandat 4412.200 kb on - strandat 4412.200 kb on - strandat 4413.747 kb on - strandat 4413.797 kb on - strandat 4413.879 kb on - strand, within PfGW456L13_3936at 4414.057 kb on - strand, within PfGW456L13_3936at 4414.057 kb on - strand, within PfGW456L13_3936at 4414.057 kb on - strand, within PfGW456L13_3936at 4414.057 kb on - strand, within PfGW456L13_3936at 4414.074 kb on - strand, within PfGW456L13_3936at 4414.074 kb on - strand, within PfGW456L13_3936at 4414.116 kb on - strand, within PfGW456L13_3936at 4414.116 kb on - strand, within PfGW456L13_3936at 4414.116 kb on - strand, within PfGW456L13_3936at 4414.116 kb on - strand, within PfGW456L13_3936at 4414.116 kb on - strand, within PfGW456L13_3936at 4414.118 kb on - strand, within PfGW456L13_3936at 4414.118 kb on - strand, within PfGW456L13_3936at 4414.118 kb on - strand, within PfGW456L13_3936at 4414.118 kb on - strand, within PfGW456L13_3936at 4414.320 kb on - strandat 4414.404 kb on - strandat 4414.409 kb on + strandat 4414.410 kb on - strandat 4414.410 kb on - strandat 4414.550 kb on + strand, within PfGW456L13_3937at 4414.551 kb on - strand, within PfGW456L13_3937at 4414.559 kb on + strand, within PfGW456L13_3937at 4414.560 kb on - strand, within PfGW456L13_3937at 4414.560 kb on - strand, within PfGW456L13_3937at 4414.560 kb on - strand, within PfGW456L13_3937

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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4,411,231 + PfGW456L13_3934 0.27 -2.0
4,411,696 + PfGW456L13_3934 0.65 +1.0
4,411,697 - PfGW456L13_3934 0.65 -0.1
4,411,697 - PfGW456L13_3934 0.65 -0.6
4,411,727 - PfGW456L13_3934 0.67 +0.0
4,411,727 - PfGW456L13_3934 0.67 +0.2
4,411,758 + PfGW456L13_3934 0.70 +0.4
4,411,758 + PfGW456L13_3934 0.70 +1.0
4,411,759 - PfGW456L13_3934 0.70 -1.4
4,411,980 + PfGW456L13_3934 0.88 +0.3
4,411,980 + PfGW456L13_3934 0.88 -0.0
4,411,980 + PfGW456L13_3934 0.88 +0.7
4,411,980 + PfGW456L13_3934 0.88 +0.0
4,411,980 + PfGW456L13_3934 0.88 +0.0
4,411,980 + PfGW456L13_3934 0.88 +0.6
4,411,981 - PfGW456L13_3934 0.88 +1.7
4,411,981 - PfGW456L13_3934 0.88 -0.5
4,411,981 - PfGW456L13_3934 0.88 -0.5
4,411,981 - PfGW456L13_3934 0.88 +0.3
4,411,981 - PfGW456L13_3934 0.88 +0.6
4,411,981 - PfGW456L13_3934 0.88 +0.2
4,411,981 - PfGW456L13_3934 0.88 +1.0
4,411,981 - PfGW456L13_3934 0.88 -1.8
4,411,981 - PfGW456L13_3934 0.88 +1.1
4,411,984 + PfGW456L13_3934 0.89 +1.6
4,411,984 + PfGW456L13_3934 0.89 +0.2
4,411,984 + PfGW456L13_3934 0.89 +1.7
4,411,984 + PfGW456L13_3934 0.89 -0.2
4,411,984 + PfGW456L13_3934 0.89 -0.5
4,411,984 + PfGW456L13_3934 0.89 -1.0
4,411,984 + PfGW456L13_3934 0.89 +0.5
4,411,984 + PfGW456L13_3934 0.89 -0.9
4,411,985 - PfGW456L13_3934 0.89 +0.3
4,411,985 - PfGW456L13_3934 0.89 -0.5
4,411,985 - PfGW456L13_3934 0.89 +1.0
4,411,985 - PfGW456L13_3934 0.89 -0.4
4,411,985 - PfGW456L13_3934 0.89 +0.4
4,412,030 + -1.6
4,412,049 + +1.3
4,412,070 + -0.3
4,412,147 + -0.1
4,412,147 + -0.2
4,412,151 + -0.6
4,412,151 + -1.4
4,412,151 + -0.1
4,412,151 + -0.1
4,412,151 + -3.8
4,412,151 + -1.0
4,412,151 + -2.0
4,412,151 + +0.4
4,412,151 + +0.2
4,412,151 + +0.7
4,412,152 - +0.8
4,412,152 - +1.2
4,412,152 - +2.0
4,412,152 - -0.5
4,412,152 - -0.7
4,412,152 - +1.8
4,412,170 + +0.8
4,412,171 - +0.3
4,412,199 + +0.0
4,412,199 + -2.3
4,412,199 + -0.2
4,412,200 - +1.4
4,412,200 - +1.5
4,413,747 - -2.6
4,413,797 - +0.7
4,413,879 - PfGW456L13_3936 0.23 -1.0
4,414,057 - PfGW456L13_3936 0.55 +0.0
4,414,057 - PfGW456L13_3936 0.55 -0.8
4,414,057 - PfGW456L13_3936 0.55 +0.3
4,414,057 - PfGW456L13_3936 0.55 -1.0
4,414,074 - PfGW456L13_3936 0.58 -1.6
4,414,074 - PfGW456L13_3936 0.58 -0.3
4,414,116 - PfGW456L13_3936 0.65 -1.6
4,414,116 - PfGW456L13_3936 0.65 -2.3
4,414,116 - PfGW456L13_3936 0.65 +0.0
4,414,116 - PfGW456L13_3936 0.65 -2.0
4,414,116 - PfGW456L13_3936 0.65 +1.0
4,414,118 - PfGW456L13_3936 0.66 -1.0
4,414,118 - PfGW456L13_3936 0.66 -1.0
4,414,118 - PfGW456L13_3936 0.66 +0.0
4,414,118 - PfGW456L13_3936 0.66 -0.6
4,414,320 - -0.3
4,414,404 - -0.7
4,414,409 + +1.0
4,414,410 - -1.0
4,414,410 - -0.3
4,414,550 + PfGW456L13_3937 0.21 -2.0
4,414,551 - PfGW456L13_3937 0.21 +1.8
4,414,559 + PfGW456L13_3937 0.23 -0.2
4,414,560 - PfGW456L13_3937 0.23 +0.5
4,414,560 - PfGW456L13_3937 0.23 -2.3
4,414,560 - PfGW456L13_3937 0.23 -2.3

Or see this region's nucleotide sequence