Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3911 and PfGW456L13_3912 are separated by 55 nucleotides PfGW456L13_3912 and PfGW456L13_3913 are separated by 230 nucleotides
PfGW456L13_3911 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 4,384,262 to 4,385,815
_3911
PfGW456L13_3912 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 4,385,871 to 4,386,788
_3912
PfGW456L13_3913 - FIG00953132: hypothetical protein, at 4,387,019 to 4,387,480
_3913
Position (kb) 4385
4386
4387 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4385.068 kb on + strand, within PfGW456L13_3911 at 4385.068 kb on + strand, within PfGW456L13_3911 at 4385.068 kb on + strand, within PfGW456L13_3911 at 4385.068 kb on + strand, within PfGW456L13_3911 at 4385.068 kb on + strand, within PfGW456L13_3911 at 4385.069 kb on - strand, within PfGW456L13_3911 at 4385.069 kb on - strand, within PfGW456L13_3911 at 4385.069 kb on - strand, within PfGW456L13_3911 at 4385.069 kb on - strand, within PfGW456L13_3911 at 4385.069 kb on - strand, within PfGW456L13_3911 at 4385.069 kb on - strand, within PfGW456L13_3911 at 4385.121 kb on + strand, within PfGW456L13_3911 at 4385.121 kb on + strand, within PfGW456L13_3911 at 4385.121 kb on + strand, within PfGW456L13_3911 at 4385.122 kb on - strand, within PfGW456L13_3911 at 4385.122 kb on - strand, within PfGW456L13_3911 at 4385.122 kb on - strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.217 kb on + strand, within PfGW456L13_3911 at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.218 kb on - strand at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.218 kb on - strand, within PfGW456L13_3911 at 4385.222 kb on - strand, within PfGW456L13_3911 at 4385.228 kb on + strand, within PfGW456L13_3911 at 4385.601 kb on + strand, within PfGW456L13_3911 at 4385.656 kb on + strand, within PfGW456L13_3911 at 4385.656 kb on + strand, within PfGW456L13_3911 at 4385.760 kb on + strand at 4385.761 kb on - strand at 4385.761 kb on - strand at 4385.815 kb on + strand at 4385.815 kb on + strand at 4385.815 kb on + strand at 4385.816 kb on - strand at 4385.816 kb on - strand at 4385.857 kb on - strand at 4385.872 kb on + strand at 4385.872 kb on + strand at 4385.873 kb on - strand at 4385.873 kb on - strand at 4385.890 kb on - strand at 4386.029 kb on + strand, within PfGW456L13_3912 at 4386.029 kb on + strand, within PfGW456L13_3912 at 4386.029 kb on + strand, within PfGW456L13_3912 at 4386.029 kb on + strand, within PfGW456L13_3912 at 4386.030 kb on - strand, within PfGW456L13_3912 at 4386.030 kb on - strand at 4386.055 kb on + strand, within PfGW456L13_3912 at 4386.183 kb on + strand, within PfGW456L13_3912 at 4386.183 kb on + strand, within PfGW456L13_3912 at 4386.183 kb on + strand, within PfGW456L13_3912 at 4386.184 kb on - strand, within PfGW456L13_3912 at 4386.184 kb on - strand, within PfGW456L13_3912 at 4386.184 kb on - strand, within PfGW456L13_3912 at 4386.184 kb on - strand, within PfGW456L13_3912 at 4386.184 kb on - strand, within PfGW456L13_3912 at 4386.293 kb on + strand, within PfGW456L13_3912 at 4386.293 kb on + strand, within PfGW456L13_3912 at 4386.355 kb on + strand, within PfGW456L13_3912 at 4386.397 kb on - strand, within PfGW456L13_3912 at 4386.572 kb on + strand, within PfGW456L13_3912 at 4386.652 kb on + strand, within PfGW456L13_3912 at 4386.653 kb on - strand, within PfGW456L13_3912 at 4386.788 kb on + strand at 4386.788 kb on + strand at 4386.788 kb on + strand at 4386.789 kb on - strand at 4386.789 kb on - strand at 4386.844 kb on + strand at 4386.844 kb on + strand at 4386.844 kb on + strand at 4386.844 kb on + strand at 4386.845 kb on - strand at 4386.845 kb on - strand at 4386.850 kb on + strand at 4386.851 kb on - strand at 4386.876 kb on + strand at 4386.876 kb on + strand at 4386.944 kb on + strand at 4386.944 kb on + strand at 4386.944 kb on + strand at 4386.944 kb on + strand at 4386.944 kb on + strand at 4386.993 kb on + strand at 4386.993 kb on + strand at 4386.994 kb on - strand at 4387.020 kb on + strand at 4387.020 kb on + strand at 4387.021 kb on - strand at 4387.021 kb on - strand at 4387.021 kb on - strand at 4387.021 kb on - strand at 4387.021 kb on - strand at 4387.021 kb on - strand at 4387.021 kb on - strand at 4387.021 kb on - strand at 4387.031 kb on - strand at 4387.130 kb on + strand, within PfGW456L13_3913 at 4387.130 kb on + strand, within PfGW456L13_3913 at 4387.130 kb on + strand, within PfGW456L13_3913 at 4387.131 kb on - strand, within PfGW456L13_3913 at 4387.140 kb on - strand, within PfGW456L13_3913 at 4387.171 kb on - strand, within PfGW456L13_3913 at 4387.171 kb on - strand, within PfGW456L13_3913 at 4387.273 kb on + strand, within PfGW456L13_3913 at 4387.298 kb on + strand, within PfGW456L13_3913 at 4387.472 kb on + strand at 4387.473 kb on - strand at 4387.473 kb on - strand at 4387.539 kb on - strand at 4387.565 kb on + strand at 4387.566 kb on - strand at 4387.566 kb on - strand at 4387.616 kb on - strand at 4387.695 kb on + strand at 4387.728 kb on - strand at 4387.780 kb on + strand at 4387.780 kb on + strand at 4387.781 kb on - strand at 4387.781 kb on - strand at 4387.781 kb on - strand at 4387.784 kb on + strand at 4387.784 kb on + strand at 4387.784 kb on + strand at 4387.784 kb on + strand at 4387.784 kb on + strand at 4387.785 kb on - strand at 4387.785 kb on - strand at 4387.785 kb on - strand at 4387.785 kb on - strand at 4387.785 kb on - strand at 4387.785 kb on - strand at 4387.785 kb on - strand at 4387.785 kb on - strand at 4387.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x remove 4,385,068 + PfGW456L13_3911 0.52 +1.1 4,385,068 + PfGW456L13_3911 0.52 -0.9 4,385,068 + PfGW456L13_3911 0.52 +0.3 4,385,068 + PfGW456L13_3911 0.52 -0.6 4,385,068 + PfGW456L13_3911 0.52 +0.1 4,385,069 - PfGW456L13_3911 0.52 +0.6 4,385,069 - PfGW456L13_3911 0.52 -0.0 4,385,069 - PfGW456L13_3911 0.52 -1.2 4,385,069 - PfGW456L13_3911 0.52 -0.7 4,385,069 - PfGW456L13_3911 0.52 -2.3 4,385,069 - PfGW456L13_3911 0.52 +0.8 4,385,121 + PfGW456L13_3911 0.55 +0.4 4,385,121 + PfGW456L13_3911 0.55 +0.6 4,385,121 + PfGW456L13_3911 0.55 -1.0 4,385,122 - PfGW456L13_3911 0.55 -0.6 4,385,122 - PfGW456L13_3911 0.55 +1.7 4,385,122 - PfGW456L13_3911 0.55 +1.2 4,385,217 + PfGW456L13_3911 0.61 +0.4 4,385,217 + PfGW456L13_3911 0.61 +0.4 4,385,217 + -0.0 4,385,217 + PfGW456L13_3911 0.61 -3.5 4,385,217 + PfGW456L13_3911 0.61 -0.8 4,385,217 + PfGW456L13_3911 0.61 +0.7 4,385,217 + PfGW456L13_3911 0.61 +0.4 4,385,217 + PfGW456L13_3911 0.61 +0.3 4,385,217 + PfGW456L13_3911 0.61 +0.9 4,385,217 + PfGW456L13_3911 0.61 -0.1 4,385,217 + PfGW456L13_3911 0.61 -1.0 4,385,217 + PfGW456L13_3911 0.61 -0.5 4,385,218 - PfGW456L13_3911 0.62 -0.2 4,385,218 - PfGW456L13_3911 0.62 -0.9 4,385,218 - PfGW456L13_3911 0.62 -1.6 4,385,218 - PfGW456L13_3911 0.62 +1.4 4,385,218 - -2.0 4,385,218 - PfGW456L13_3911 0.62 +1.1 4,385,218 - PfGW456L13_3911 0.62 -0.0 4,385,218 - PfGW456L13_3911 0.62 -0.3 4,385,218 - PfGW456L13_3911 0.62 -0.0 4,385,222 - PfGW456L13_3911 0.62 +1.4 4,385,228 + PfGW456L13_3911 0.62 +0.6 4,385,601 + PfGW456L13_3911 0.86 +0.2 4,385,656 + PfGW456L13_3911 0.90 +0.2 4,385,656 + PfGW456L13_3911 0.90 -0.6 4,385,760 + +0.0 4,385,761 - +1.1 4,385,761 - +0.8 4,385,815 + +0.4 4,385,815 + -1.0 4,385,815 + +0.7 4,385,816 - +0.9 4,385,816 - +0.2 4,385,857 - -1.3 4,385,872 + -0.6 4,385,872 + +0.2 4,385,873 - +1.0 4,385,873 - -1.9 4,385,890 - +0.2 4,386,029 + PfGW456L13_3912 0.17 +0.3 4,386,029 + PfGW456L13_3912 0.17 +1.5 4,386,029 + PfGW456L13_3912 0.17 +1.0 4,386,029 + PfGW456L13_3912 0.17 +1.2 4,386,030 - PfGW456L13_3912 0.17 -0.1 4,386,030 - -1.0 4,386,055 + PfGW456L13_3912 0.20 -1.6 4,386,183 + PfGW456L13_3912 0.34 -2.5 4,386,183 + PfGW456L13_3912 0.34 -3.8 4,386,183 + PfGW456L13_3912 0.34 +1.6 4,386,184 - PfGW456L13_3912 0.34 +0.1 4,386,184 - PfGW456L13_3912 0.34 +0.3 4,386,184 - PfGW456L13_3912 0.34 +1.0 4,386,184 - PfGW456L13_3912 0.34 +0.0 4,386,184 - PfGW456L13_3912 0.34 +0.3 4,386,293 + PfGW456L13_3912 0.46 +0.3 4,386,293 + PfGW456L13_3912 0.46 +0.2 4,386,355 + PfGW456L13_3912 0.53 -0.2 4,386,397 - PfGW456L13_3912 0.57 +0.2 4,386,572 + PfGW456L13_3912 0.76 +1.0 4,386,652 + PfGW456L13_3912 0.85 -0.4 4,386,653 - PfGW456L13_3912 0.85 -1.9 4,386,788 + -0.5 4,386,788 + +2.0 4,386,788 + -1.3 4,386,789 - +3.0 4,386,789 - -0.7 4,386,844 + -0.4 4,386,844 + +0.0 4,386,844 + -0.4 4,386,844 + -1.0 4,386,845 - -1.2 4,386,845 - -0.6 4,386,850 + -0.2 4,386,851 - +0.2 4,386,876 + -0.5 4,386,876 + +0.0 4,386,944 + -0.7 4,386,944 + +0.4 4,386,944 + +1.9 4,386,944 + -1.1 4,386,944 + +1.6 4,386,993 + +1.0 4,386,993 + -0.2 4,386,994 - +0.5 4,387,020 + -0.8 4,387,020 + +0.0 4,387,021 - -0.5 4,387,021 - -1.0 4,387,021 - +0.2 4,387,021 - -1.1 4,387,021 - -2.3 4,387,021 - +0.6 4,387,021 - -1.0 4,387,021 - -1.0 4,387,031 - +0.7 4,387,130 + PfGW456L13_3913 0.24 +0.3 4,387,130 + PfGW456L13_3913 0.24 +0.6 4,387,130 + PfGW456L13_3913 0.24 +0.1 4,387,131 - PfGW456L13_3913 0.24 +2.0 4,387,140 - PfGW456L13_3913 0.26 +0.2 4,387,171 - PfGW456L13_3913 0.33 +0.6 4,387,171 - PfGW456L13_3913 0.33 -1.6 4,387,273 + PfGW456L13_3913 0.55 +0.3 4,387,298 + PfGW456L13_3913 0.60 +0.1 4,387,472 + +0.6 4,387,473 - +0.7 4,387,473 - +0.4 4,387,539 - -0.1 4,387,565 + -0.1 4,387,566 - +0.2 4,387,566 - +0.3 4,387,616 - +0.9 4,387,695 + +0.5 4,387,728 - +0.0 4,387,780 + +0.7 4,387,780 + -1.6 4,387,781 - +0.4 4,387,781 - -1.2 4,387,781 - +0.0 4,387,784 + -1.6 4,387,784 + +0.6 4,387,784 + +1.3 4,387,784 + +0.0 4,387,784 + -0.7 4,387,785 - +1.0 4,387,785 - +0.7 4,387,785 - -0.2 4,387,785 - +0.6 4,387,785 - -0.8 4,387,785 - -0.5 4,387,785 - +0.0 4,387,785 - -0.6 4,387,785 - -0.9
Or see this region's nucleotide sequence