Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3389

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3387 and PfGW456L13_3388 are separated by 42 nucleotidesPfGW456L13_3388 and PfGW456L13_3389 overlap by 4 nucleotidesPfGW456L13_3389 and PfGW456L13_3390 overlap by 1 nucleotides PfGW456L13_3387 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 3,803,999 to 3,805,123 _3387 PfGW456L13_3388 - Enoyl-CoA hydratase (EC 4.2.1.17), at 3,805,166 to 3,805,966 _3388 PfGW456L13_3389 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 3,805,963 to 3,807,036 _3389 PfGW456L13_3390 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 3,807,036 to 3,808,184 _3390 Position (kb) 3805 3806 3807 3808Strain fitness (log2 ratio) -2 -1 0 1 2at 3805.044 kb on + strandat 3805.045 kb on - strandat 3805.112 kb on + strandat 3805.113 kb on - strandat 3805.164 kb on - strandat 3805.164 kb on - strandat 3805.291 kb on + strand, within PfGW456L13_3388at 3805.291 kb on + strand, within PfGW456L13_3388at 3805.291 kb on + strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.292 kb on - strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strandat 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.445 kb on + strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.446 kb on - strand, within PfGW456L13_3388at 3805.668 kb on + strand, within PfGW456L13_3388at 3805.669 kb on - strand, within PfGW456L13_3388at 3805.669 kb on - strand, within PfGW456L13_3388at 3805.684 kb on + strand, within PfGW456L13_3388at 3805.685 kb on - strand, within PfGW456L13_3388at 3805.704 kb on + strand, within PfGW456L13_3388at 3805.705 kb on - strand, within PfGW456L13_3388at 3805.705 kb on - strand, within PfGW456L13_3388at 3805.705 kb on - strand, within PfGW456L13_3388at 3805.708 kb on + strand, within PfGW456L13_3388at 3805.709 kb on - strand, within PfGW456L13_3388at 3805.723 kb on - strand, within PfGW456L13_3388at 3805.838 kb on + strand, within PfGW456L13_3388at 3805.838 kb on + strand, within PfGW456L13_3388at 3805.838 kb on + strand, within PfGW456L13_3388at 3806.027 kb on + strandat 3806.388 kb on - strandat 3806.388 kb on - strand, within PfGW456L13_3389at 3806.407 kb on + strand, within PfGW456L13_3389at 3806.510 kb on - strand, within PfGW456L13_3389at 3806.589 kb on + strand, within PfGW456L13_3389at 3806.679 kb on - strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.849 kb on + strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strandat 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strandat 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strandat 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.850 kb on - strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.853 kb on + strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.854 kb on - strand, within PfGW456L13_3389at 3806.936 kb on - strandat 3806.972 kb on - strandat 3806.972 kb on - strandat 3806.972 kb on - strandat 3806.972 kb on - strandat 3806.972 kb on - strandat 3806.972 kb on - strandat 3806.975 kb on + strandat 3807.026 kb on - strandat 3807.127 kb on + strandat 3807.302 kb on + strand, within PfGW456L13_3390at 3807.303 kb on - strand, within PfGW456L13_3390at 3807.303 kb on - strand, within PfGW456L13_3390at 3807.354 kb on + strand, within PfGW456L13_3390at 3807.670 kb on + strand, within PfGW456L13_3390at 3807.671 kb on - strand, within PfGW456L13_3390at 3807.671 kb on - strand, within PfGW456L13_3390at 3807.725 kb on + strand, within PfGW456L13_3390at 3807.805 kb on + strand, within PfGW456L13_3390at 3807.806 kb on - strand, within PfGW456L13_3390at 3807.806 kb on - strand, within PfGW456L13_3390at 3807.835 kb on + strand, within PfGW456L13_3390at 3807.953 kb on - strand, within PfGW456L13_3390at 3807.953 kb on - strand, within PfGW456L13_3390at 3807.986 kb on - strand, within PfGW456L13_3390

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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3,805,044 + +0.7
3,805,045 - -0.1
3,805,112 + -1.3
3,805,113 - +0.6
3,805,164 - -0.2
3,805,164 - -0.5
3,805,291 + PfGW456L13_3388 0.16 -0.2
3,805,291 + PfGW456L13_3388 0.16 +0.6
3,805,291 + PfGW456L13_3388 0.16 -0.4
3,805,292 - PfGW456L13_3388 0.16 +0.9
3,805,292 - PfGW456L13_3388 0.16 -0.0
3,805,292 - PfGW456L13_3388 0.16 -0.2
3,805,292 - PfGW456L13_3388 0.16 +0.4
3,805,292 - PfGW456L13_3388 0.16 -1.6
3,805,292 - PfGW456L13_3388 0.16 +0.1
3,805,445 + PfGW456L13_3388 0.35 -0.8
3,805,445 + PfGW456L13_3388 0.35 -0.3
3,805,445 + PfGW456L13_3388 0.35 +0.4
3,805,445 + -0.0
3,805,445 + PfGW456L13_3388 0.35 -1.2
3,805,445 + PfGW456L13_3388 0.35 -1.2
3,805,445 + PfGW456L13_3388 0.35 -0.9
3,805,445 + PfGW456L13_3388 0.35 +2.6
3,805,445 + PfGW456L13_3388 0.35 -0.6
3,805,445 + PfGW456L13_3388 0.35 -1.6
3,805,446 - PfGW456L13_3388 0.35 -1.5
3,805,446 - PfGW456L13_3388 0.35 -0.6
3,805,446 - PfGW456L13_3388 0.35 -0.0
3,805,446 - PfGW456L13_3388 0.35 -0.4
3,805,446 - PfGW456L13_3388 0.35 +1.4
3,805,446 - PfGW456L13_3388 0.35 -0.1
3,805,446 - PfGW456L13_3388 0.35 -0.7
3,805,446 - PfGW456L13_3388 0.35 +0.2
3,805,446 - PfGW456L13_3388 0.35 -0.4
3,805,446 - PfGW456L13_3388 0.35 -0.8
3,805,668 + PfGW456L13_3388 0.63 -1.7
3,805,669 - PfGW456L13_3388 0.63 -2.0
3,805,669 - PfGW456L13_3388 0.63 -0.2
3,805,684 + PfGW456L13_3388 0.65 -0.3
3,805,685 - PfGW456L13_3388 0.65 -0.0
3,805,704 + PfGW456L13_3388 0.67 +1.0
3,805,705 - PfGW456L13_3388 0.67 -1.4
3,805,705 - PfGW456L13_3388 0.67 +0.5
3,805,705 - PfGW456L13_3388 0.67 +1.2
3,805,708 + PfGW456L13_3388 0.68 +0.5
3,805,709 - PfGW456L13_3388 0.68 -0.6
3,805,723 - PfGW456L13_3388 0.70 -1.4
3,805,838 + PfGW456L13_3388 0.84 -0.6
3,805,838 + PfGW456L13_3388 0.84 +1.3
3,805,838 + PfGW456L13_3388 0.84 -0.1
3,806,027 + -0.0
3,806,388 - -0.6
3,806,388 - PfGW456L13_3389 0.40 -0.1
3,806,407 + PfGW456L13_3389 0.41 -1.0
3,806,510 - PfGW456L13_3389 0.51 -0.4
3,806,589 + PfGW456L13_3389 0.58 -0.0
3,806,679 - PfGW456L13_3389 0.67 -0.2
3,806,849 + PfGW456L13_3389 0.82 +0.4
3,806,849 + PfGW456L13_3389 0.82 +1.3
3,806,849 + PfGW456L13_3389 0.82 -0.3
3,806,849 + PfGW456L13_3389 0.82 +0.6
3,806,850 - PfGW456L13_3389 0.83 +1.3
3,806,850 - PfGW456L13_3389 0.83 -0.0
3,806,850 - PfGW456L13_3389 0.83 -0.6
3,806,850 - PfGW456L13_3389 0.83 -0.9
3,806,850 - PfGW456L13_3389 0.83 -1.0
3,806,850 - PfGW456L13_3389 0.83 -2.4
3,806,850 - +0.6
3,806,850 - PfGW456L13_3389 0.83 +0.3
3,806,850 - PfGW456L13_3389 0.83 -0.6
3,806,850 - PfGW456L13_3389 0.83 -0.3
3,806,850 - PfGW456L13_3389 0.83 -0.4
3,806,850 - +0.6
3,806,850 - PfGW456L13_3389 0.83 -2.5
3,806,850 - PfGW456L13_3389 0.83 +1.2
3,806,850 - -2.3
3,806,850 - PfGW456L13_3389 0.83 +0.7
3,806,850 - PfGW456L13_3389 0.83 -0.7
3,806,850 - PfGW456L13_3389 0.83 -0.7
3,806,850 - PfGW456L13_3389 0.83 +0.3
3,806,850 - PfGW456L13_3389 0.83 +0.2
3,806,850 - PfGW456L13_3389 0.83 -0.5
3,806,850 - PfGW456L13_3389 0.83 -0.1
3,806,850 - PfGW456L13_3389 0.83 +0.7
3,806,850 - PfGW456L13_3389 0.83 -1.0
3,806,850 - PfGW456L13_3389 0.83 -0.5
3,806,853 + PfGW456L13_3389 0.83 +0.7
3,806,853 + PfGW456L13_3389 0.83 +1.0
3,806,853 + PfGW456L13_3389 0.83 -1.9
3,806,853 + PfGW456L13_3389 0.83 -1.0
3,806,853 + PfGW456L13_3389 0.83 +0.3
3,806,854 - PfGW456L13_3389 0.83 +0.2
3,806,854 - PfGW456L13_3389 0.83 -0.7
3,806,854 - PfGW456L13_3389 0.83 -0.0
3,806,854 - PfGW456L13_3389 0.83 -1.9
3,806,854 - PfGW456L13_3389 0.83 -0.1
3,806,854 - PfGW456L13_3389 0.83 +0.7
3,806,936 - -0.6
3,806,972 - -0.3
3,806,972 - -0.7
3,806,972 - -0.6
3,806,972 - -0.1
3,806,972 - -0.6
3,806,972 - -0.0
3,806,975 + +0.4
3,807,026 - +0.3
3,807,127 + -1.4
3,807,302 + PfGW456L13_3390 0.23 -0.0
3,807,303 - PfGW456L13_3390 0.23 +0.4
3,807,303 - PfGW456L13_3390 0.23 -1.0
3,807,354 + PfGW456L13_3390 0.28 -0.3
3,807,670 + PfGW456L13_3390 0.55 +0.1
3,807,671 - PfGW456L13_3390 0.55 +0.3
3,807,671 - PfGW456L13_3390 0.55 +0.2
3,807,725 + PfGW456L13_3390 0.60 +0.4
3,807,805 + PfGW456L13_3390 0.67 -0.9
3,807,806 - PfGW456L13_3390 0.67 +0.8
3,807,806 - PfGW456L13_3390 0.67 -0.2
3,807,835 + PfGW456L13_3390 0.70 +0.3
3,807,953 - PfGW456L13_3390 0.80 +1.4
3,807,953 - PfGW456L13_3390 0.80 -2.0
3,807,986 - PfGW456L13_3390 0.83 -0.6

Or see this region's nucleotide sequence