Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2876

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2875 and PfGW456L13_2876 are separated by 154 nucleotidesPfGW456L13_2876 and PfGW456L13_2877 are separated by 13 nucleotides PfGW456L13_2875 - Sigma-54 dependent transcriptional regulator, at 3,202,108 to 3,203,523 _2875 PfGW456L13_2876 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 3,203,678 to 3,205,255 _2876 PfGW456L13_2877 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 3,205,269 to 3,206,291 _2877 Position (kb) 3203 3204 3205 3206Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.066 kb on + strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.067 kb on - strand, within PfGW456L13_2875at 3203.127 kb on + strandat 3203.127 kb on + strandat 3203.127 kb on + strandat 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.127 kb on + strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.128 kb on - strand, within PfGW456L13_2875at 3203.129 kb on + strand, within PfGW456L13_2875at 3203.129 kb on + strand, within PfGW456L13_2875at 3203.130 kb on - strand, within PfGW456L13_2875at 3203.130 kb on - strand, within PfGW456L13_2875at 3203.130 kb on - strand, within PfGW456L13_2875at 3203.197 kb on + strand, within PfGW456L13_2875at 3203.197 kb on + strand, within PfGW456L13_2875at 3203.197 kb on + strand, within PfGW456L13_2875at 3203.381 kb on + strand, within PfGW456L13_2875at 3203.381 kb on + strand, within PfGW456L13_2875at 3203.495 kb on + strandat 3203.495 kb on + strandat 3203.495 kb on + strandat 3203.496 kb on - strandat 3203.544 kb on + strandat 3203.545 kb on - strandat 3203.545 kb on - strandat 3203.668 kb on - strandat 3203.679 kb on + strandat 3203.679 kb on + strandat 3203.679 kb on + strandat 3203.680 kb on - strandat 3203.680 kb on - strandat 3203.708 kb on + strandat 3203.708 kb on + strandat 3203.708 kb on + strandat 3203.709 kb on - strandat 3203.709 kb on - strandat 3203.721 kb on + strandat 3203.721 kb on + strandat 3203.721 kb on + strandat 3203.722 kb on - strandat 3203.847 kb on + strand, within PfGW456L13_2876at 3203.847 kb on + strand, within PfGW456L13_2876at 3203.847 kb on + strand, within PfGW456L13_2876at 3203.847 kb on + strand, within PfGW456L13_2876at 3203.848 kb on - strand, within PfGW456L13_2876at 3203.848 kb on - strand, within PfGW456L13_2876at 3203.983 kb on + strand, within PfGW456L13_2876at 3203.984 kb on - strand, within PfGW456L13_2876at 3203.984 kb on - strand, within PfGW456L13_2876at 3204.209 kb on + strand, within PfGW456L13_2876at 3204.210 kb on - strand, within PfGW456L13_2876at 3204.210 kb on - strand, within PfGW456L13_2876at 3204.331 kb on + strand, within PfGW456L13_2876at 3204.356 kb on - strand, within PfGW456L13_2876at 3204.356 kb on - strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.434 kb on + strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.435 kb on - strand, within PfGW456L13_2876at 3204.453 kb on - strand, within PfGW456L13_2876at 3204.453 kb on - strand, within PfGW456L13_2876at 3204.509 kb on + strand, within PfGW456L13_2876at 3204.509 kb on + strand, within PfGW456L13_2876at 3204.509 kb on + strand, within PfGW456L13_2876at 3204.510 kb on - strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.517 kb on + strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.518 kb on - strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.519 kb on + strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876at 3204.520 kb on - strand, within PfGW456L13_2876at 3204.642 kb on - strand, within PfGW456L13_2876at 3204.642 kb on - strand, within PfGW456L13_2876at 3204.642 kb on - strand, within PfGW456L13_2876at 3204.852 kb on - strand, within PfGW456L13_2876at 3205.255 kb on + strandat 3205.255 kb on + strandat 3205.255 kb on + strandat 3205.255 kb on + strandat 3205.499 kb on - strand, within PfGW456L13_2877at 3205.499 kb on - strand, within PfGW456L13_2877at 3205.588 kb on + strand, within PfGW456L13_2877at 3205.588 kb on + strand, within PfGW456L13_2877at 3205.589 kb on - strand, within PfGW456L13_2877at 3205.720 kb on + strand, within PfGW456L13_2877at 3205.720 kb on + strand, within PfGW456L13_2877at 3205.720 kb on + strand, within PfGW456L13_2877at 3205.720 kb on + strand, within PfGW456L13_2877at 3205.721 kb on - strand, within PfGW456L13_2877at 3205.721 kb on - strand, within PfGW456L13_2877at 3205.721 kb on - strand, within PfGW456L13_2877at 3205.721 kb on - strandat 3205.789 kb on + strand, within PfGW456L13_2877at 3205.789 kb on + strand, within PfGW456L13_2877at 3205.789 kb on + strand, within PfGW456L13_2877at 3205.969 kb on + strand, within PfGW456L13_2877at 3205.969 kb on + strand, within PfGW456L13_2877at 3205.969 kb on + strand, within PfGW456L13_2877at 3205.969 kb on + strand, within PfGW456L13_2877at 3205.970 kb on - strand, within PfGW456L13_2877at 3206.047 kb on + strand, within PfGW456L13_2877at 3206.047 kb on + strand, within PfGW456L13_2877at 3206.047 kb on + strand, within PfGW456L13_2877at 3206.047 kb on + strand, within PfGW456L13_2877at 3206.048 kb on - strand, within PfGW456L13_2877at 3206.048 kb on - strand, within PfGW456L13_2877at 3206.048 kb on - strand, within PfGW456L13_2877at 3206.125 kb on + strand, within PfGW456L13_2877at 3206.125 kb on + strand, within PfGW456L13_2877at 3206.125 kb on + strand, within PfGW456L13_2877at 3206.126 kb on - strand, within PfGW456L13_2877at 3206.126 kb on - strand, within PfGW456L13_2877at 3206.126 kb on - strand, within PfGW456L13_2877at 3206.140 kb on + strand, within PfGW456L13_2877at 3206.141 kb on - strand, within PfGW456L13_2877at 3206.141 kb on - strand, within PfGW456L13_2877

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
remove
3,203,066 + PfGW456L13_2875 0.68 +1.3
3,203,066 + PfGW456L13_2875 0.68 +0.8
3,203,066 + PfGW456L13_2875 0.68 -0.2
3,203,066 + PfGW456L13_2875 0.68 +0.3
3,203,066 + PfGW456L13_2875 0.68 +0.6
3,203,067 - PfGW456L13_2875 0.68 +0.3
3,203,067 - PfGW456L13_2875 0.68 -1.6
3,203,067 - PfGW456L13_2875 0.68 +1.2
3,203,067 - PfGW456L13_2875 0.68 +0.3
3,203,067 - PfGW456L13_2875 0.68 +1.6
3,203,127 + -1.6
3,203,127 + -1.6
3,203,127 + -1.0
3,203,127 + PfGW456L13_2875 0.72 -1.3
3,203,127 + PfGW456L13_2875 0.72 -0.0
3,203,127 + PfGW456L13_2875 0.72 +0.6
3,203,127 + PfGW456L13_2875 0.72 -0.4
3,203,127 + PfGW456L13_2875 0.72 -0.0
3,203,128 - PfGW456L13_2875 0.72 -1.0
3,203,128 - PfGW456L13_2875 0.72 +1.0
3,203,128 - PfGW456L13_2875 0.72 +1.6
3,203,128 - PfGW456L13_2875 0.72 +1.2
3,203,129 + PfGW456L13_2875 0.72 +0.3
3,203,129 + PfGW456L13_2875 0.72 +0.5
3,203,130 - PfGW456L13_2875 0.72 +0.5
3,203,130 - PfGW456L13_2875 0.72 +1.3
3,203,130 - PfGW456L13_2875 0.72 -1.6
3,203,197 + PfGW456L13_2875 0.77 -0.5
3,203,197 + PfGW456L13_2875 0.77 +1.0
3,203,197 + PfGW456L13_2875 0.77 -2.6
3,203,381 + PfGW456L13_2875 0.90 -0.5
3,203,381 + PfGW456L13_2875 0.90 -0.2
3,203,495 + +1.1
3,203,495 + -0.8
3,203,495 + +0.7
3,203,496 - +0.4
3,203,544 + +1.6
3,203,545 - -0.3
3,203,545 - -0.5
3,203,668 - -0.2
3,203,679 + -0.6
3,203,679 + +1.6
3,203,679 + +0.6
3,203,680 - +0.2
3,203,680 - +0.2
3,203,708 + +0.4
3,203,708 + -0.3
3,203,708 + +0.4
3,203,709 - +1.0
3,203,709 - +0.3
3,203,721 + -0.0
3,203,721 + +0.6
3,203,721 + -2.6
3,203,722 - +0.3
3,203,847 + PfGW456L13_2876 0.11 +0.7
3,203,847 + PfGW456L13_2876 0.11 -0.6
3,203,847 + PfGW456L13_2876 0.11 +0.1
3,203,847 + PfGW456L13_2876 0.11 -2.0
3,203,848 - PfGW456L13_2876 0.11 +0.4
3,203,848 - PfGW456L13_2876 0.11 +0.8
3,203,983 + PfGW456L13_2876 0.19 +0.4
3,203,984 - PfGW456L13_2876 0.19 +0.3
3,203,984 - PfGW456L13_2876 0.19 +0.8
3,204,209 + PfGW456L13_2876 0.34 +1.1
3,204,210 - PfGW456L13_2876 0.34 +1.1
3,204,210 - PfGW456L13_2876 0.34 +1.0
3,204,331 + PfGW456L13_2876 0.41 +0.0
3,204,356 - PfGW456L13_2876 0.43 +3.0
3,204,356 - PfGW456L13_2876 0.43 -0.7
3,204,434 + PfGW456L13_2876 0.48 +1.0
3,204,434 + PfGW456L13_2876 0.48 -0.0
3,204,434 + PfGW456L13_2876 0.48 +0.2
3,204,434 + PfGW456L13_2876 0.48 +0.7
3,204,434 + PfGW456L13_2876 0.48 -0.7
3,204,434 + PfGW456L13_2876 0.48 +0.6
3,204,435 - PfGW456L13_2876 0.48 -0.1
3,204,435 - PfGW456L13_2876 0.48 -0.0
3,204,435 - PfGW456L13_2876 0.48 +1.0
3,204,435 - PfGW456L13_2876 0.48 -0.6
3,204,435 - PfGW456L13_2876 0.48 +0.3
3,204,435 - PfGW456L13_2876 0.48 -0.8
3,204,453 - PfGW456L13_2876 0.49 -0.9
3,204,453 - PfGW456L13_2876 0.49 +0.6
3,204,509 + PfGW456L13_2876 0.53 -0.2
3,204,509 + PfGW456L13_2876 0.53 -0.1
3,204,509 + PfGW456L13_2876 0.53 +0.6
3,204,510 - PfGW456L13_2876 0.53 -0.0
3,204,517 + PfGW456L13_2876 0.53 +2.9
3,204,517 + PfGW456L13_2876 0.53 +0.6
3,204,517 + PfGW456L13_2876 0.53 +0.6
3,204,517 + PfGW456L13_2876 0.53 -0.3
3,204,517 + PfGW456L13_2876 0.53 +1.4
3,204,517 + PfGW456L13_2876 0.53 -0.0
3,204,517 + PfGW456L13_2876 0.53 -1.2
3,204,517 + PfGW456L13_2876 0.53 -1.0
3,204,517 + PfGW456L13_2876 0.53 -0.0
3,204,517 + PfGW456L13_2876 0.53 -0.9
3,204,517 + PfGW456L13_2876 0.53 -0.6
3,204,517 + PfGW456L13_2876 0.53 -0.0
3,204,517 + PfGW456L13_2876 0.53 +0.6
3,204,517 + PfGW456L13_2876 0.53 +0.5
3,204,517 + PfGW456L13_2876 0.53 -0.2
3,204,517 + PfGW456L13_2876 0.53 +0.4
3,204,517 + PfGW456L13_2876 0.53 +1.8
3,204,518 - PfGW456L13_2876 0.53 -0.8
3,204,518 - PfGW456L13_2876 0.53 -2.2
3,204,518 - PfGW456L13_2876 0.53 -0.2
3,204,518 - PfGW456L13_2876 0.53 -0.2
3,204,518 - PfGW456L13_2876 0.53 -1.0
3,204,518 - PfGW456L13_2876 0.53 +1.7
3,204,518 - PfGW456L13_2876 0.53 +0.9
3,204,518 - PfGW456L13_2876 0.53 -0.0
3,204,519 + PfGW456L13_2876 0.53 -0.8
3,204,519 + PfGW456L13_2876 0.53 +0.7
3,204,519 + PfGW456L13_2876 0.53 -0.3
3,204,519 + PfGW456L13_2876 0.53 +1.4
3,204,519 + PfGW456L13_2876 0.53 +0.8
3,204,520 - PfGW456L13_2876 0.53 +0.2
3,204,520 - PfGW456L13_2876 0.53 -0.2
3,204,520 - PfGW456L13_2876 0.53 -0.3
3,204,520 - PfGW456L13_2876 0.53 +1.1
3,204,642 - PfGW456L13_2876 0.61 +0.3
3,204,642 - PfGW456L13_2876 0.61 +0.6
3,204,642 - PfGW456L13_2876 0.61 +0.7
3,204,852 - PfGW456L13_2876 0.74 -1.0
3,205,255 + +0.7
3,205,255 + +0.2
3,205,255 + -0.0
3,205,255 + -0.3
3,205,499 - PfGW456L13_2877 0.22 -1.2
3,205,499 - PfGW456L13_2877 0.22 +0.8
3,205,588 + PfGW456L13_2877 0.31 -0.8
3,205,588 + PfGW456L13_2877 0.31 +0.9
3,205,589 - PfGW456L13_2877 0.31 +0.2
3,205,720 + PfGW456L13_2877 0.44 +3.8
3,205,720 + PfGW456L13_2877 0.44 +1.8
3,205,720 + PfGW456L13_2877 0.44 -0.4
3,205,720 + PfGW456L13_2877 0.44 -0.0
3,205,721 - PfGW456L13_2877 0.44 +0.1
3,205,721 - PfGW456L13_2877 0.44 -0.2
3,205,721 - PfGW456L13_2877 0.44 -1.3
3,205,721 - -1.6
3,205,789 + PfGW456L13_2877 0.51 +0.1
3,205,789 + PfGW456L13_2877 0.51 -0.0
3,205,789 + PfGW456L13_2877 0.51 +0.2
3,205,969 + PfGW456L13_2877 0.68 +0.3
3,205,969 + PfGW456L13_2877 0.68 -0.6
3,205,969 + PfGW456L13_2877 0.68 +0.4
3,205,969 + PfGW456L13_2877 0.68 +0.3
3,205,970 - PfGW456L13_2877 0.69 +0.4
3,206,047 + PfGW456L13_2877 0.76 -0.2
3,206,047 + PfGW456L13_2877 0.76 -1.1
3,206,047 + PfGW456L13_2877 0.76 +1.0
3,206,047 + PfGW456L13_2877 0.76 +0.6
3,206,048 - PfGW456L13_2877 0.76 -0.8
3,206,048 - PfGW456L13_2877 0.76 -0.6
3,206,048 - PfGW456L13_2877 0.76 -0.0
3,206,125 + PfGW456L13_2877 0.84 +2.8
3,206,125 + PfGW456L13_2877 0.84 +0.6
3,206,125 + PfGW456L13_2877 0.84 -0.6
3,206,126 - PfGW456L13_2877 0.84 -1.1
3,206,126 - PfGW456L13_2877 0.84 +2.0
3,206,126 - PfGW456L13_2877 0.84 +0.6
3,206,140 + PfGW456L13_2877 0.85 -0.8
3,206,141 - PfGW456L13_2877 0.85 +0.4
3,206,141 - PfGW456L13_2877 0.85 +0.4

Or see this region's nucleotide sequence