Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF929

Experiment: LB_plus_SM_buffer with 6C2_phage 0.25 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF927 and GFF928 are separated by 74 nucleotidesGFF928 and GFF929 are separated by 76 nucleotidesGFF929 and GFF930 are separated by 12 nucleotides GFF927 - Mobile element protein, at 105,864 to 106,310 GFF927 GFF928 - Endoribonuclease L-PSP, at 106,385 to 106,771 GFF928 GFF929 - Aspartate carbamoyltransferase regulatory chain (PyrI), at 106,848 to 107,309 GFF929 GFF930 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 107,322 to 108,257 GFF930 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1at 105.900 kb on - strandat 106.021 kb on + strand, within GFF927at 106.025 kb on + strand, within GFF927at 106.039 kb on - strand, within GFF927at 106.039 kb on - strand, within GFF927at 106.042 kb on + strand, within GFF927at 106.073 kb on + strand, within GFF927at 106.074 kb on - strand, within GFF927at 106.083 kb on - strand, within GFF927at 106.095 kb on + strand, within GFF927at 106.144 kb on - strand, within GFF927at 106.153 kb on - strand, within GFF927at 106.164 kb on + strand, within GFF927at 106.164 kb on + strand, within GFF927at 106.501 kb on - strand, within GFF928at 106.501 kb on - strand, within GFF928at 106.545 kb on - strand, within GFF928at 106.545 kb on - strand, within GFF928at 106.545 kb on - strand, within GFF928at 106.595 kb on - strand, within GFF928at 106.700 kb on - strand, within GFF928at 106.718 kb on + strand, within GFF928at 106.719 kb on - strand, within GFF928at 106.722 kb on + strand, within GFF928at 106.723 kb on - strand, within GFF928at 106.723 kb on - strand, within GFF928at 106.786 kb on + strandat 106.797 kb on + strandat 106.997 kb on + strand, within GFF929at 106.997 kb on + strand, within GFF929at 106.998 kb on - strand, within GFF929at 107.000 kb on + strand, within GFF929at 107.004 kb on - strand, within GFF929at 107.004 kb on - strand, within GFF929at 107.081 kb on - strand, within GFF929at 107.137 kb on - strand, within GFF929at 107.137 kb on - strand, within GFF929at 107.235 kb on + strand, within GFF929at 107.346 kb on + strandat 107.347 kb on - strandat 107.347 kb on - strandat 107.350 kb on - strandat 107.378 kb on + strandat 107.402 kb on - strandat 107.565 kb on + strand, within GFF930at 107.577 kb on - strand, within GFF930at 107.577 kb on - strand, within GFF930at 107.577 kb on - strand, within GFF930at 107.578 kb on + strand, within GFF930at 107.578 kb on + strand, within GFF930at 107.579 kb on - strand, within GFF930at 107.579 kb on - strand, within GFF930at 107.761 kb on + strand, within GFF930at 107.762 kb on - strand, within GFF930at 107.786 kb on + strand, within GFF930at 107.963 kb on - strand, within GFF930at 107.969 kb on + strand, within GFF930at 107.969 kb on + strand, within GFF930at 107.969 kb on + strand, within GFF930at 108.194 kb on + strandat 108.230 kb on + strandat 108.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 0.25 MOI
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105,900 - +0.6
106,021 + GFF927 0.35 -0.1
106,025 + GFF927 0.36 +0.6
106,039 - GFF927 0.39 -0.4
106,039 - GFF927 0.39 +0.3
106,042 + GFF927 0.40 +0.1
106,073 + GFF927 0.47 +0.3
106,074 - GFF927 0.47 -0.7
106,083 - GFF927 0.49 -0.5
106,095 + GFF927 0.52 -0.0
106,144 - GFF927 0.63 +0.3
106,153 - GFF927 0.65 +0.0
106,164 + GFF927 0.67 -1.4
106,164 + GFF927 0.67 -0.0
106,501 - GFF928 0.30 -0.6
106,501 - GFF928 0.30 -1.3
106,545 - GFF928 0.41 -0.6
106,545 - GFF928 0.41 -0.3
106,545 - GFF928 0.41 -1.6
106,595 - GFF928 0.54 -0.2
106,700 - GFF928 0.81 -0.1
106,718 + GFF928 0.86 -1.3
106,719 - GFF928 0.86 +0.2
106,722 + GFF928 0.87 -0.3
106,723 - GFF928 0.87 -0.1
106,723 - GFF928 0.87 -1.1
106,786 + -0.5
106,797 + +0.2
106,997 + GFF929 0.32 -1.1
106,997 + GFF929 0.32 -0.6
106,998 - GFF929 0.32 +0.6
107,000 + GFF929 0.33 +0.1
107,004 - GFF929 0.34 +0.6
107,004 - GFF929 0.34 +0.2
107,081 - GFF929 0.50 +0.1
107,137 - GFF929 0.63 +0.3
107,137 - GFF929 0.63 +0.7
107,235 + GFF929 0.84 +0.3
107,346 + -0.0
107,347 - -0.5
107,347 - -0.5
107,350 - -0.0
107,378 + -0.1
107,402 - -1.0
107,565 + GFF930 0.26 +0.0
107,577 - GFF930 0.27 +0.1
107,577 - GFF930 0.27 -2.1
107,577 - GFF930 0.27 +1.4
107,578 + GFF930 0.27 -0.4
107,578 + GFF930 0.27 +1.0
107,579 - GFF930 0.27 +0.6
107,579 - GFF930 0.27 +0.6
107,761 + GFF930 0.47 +0.3
107,762 - GFF930 0.47 -0.9
107,786 + GFF930 0.50 -0.3
107,963 - GFF930 0.68 +0.8
107,969 + GFF930 0.69 +0.0
107,969 + GFF930 0.69 -0.1
107,969 + GFF930 0.69 +0.4
108,194 + +0.4
108,230 + +0.4
108,261 + +0.0

Or see this region's nucleotide sequence