Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4129

Experiment: LB_plus_SM_buffer with 6C2_phage 0.25 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4128 and GFF4129 are separated by 165 nucleotides GFF4128 - hypothetical protein, at 7,835 to 9,709 GFF4128 GFF4129 - FIG01046935: hypothetical protein, at 9,875 to 10,750 GFF4129 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1at 9.906 kb on + strandat 10.018 kb on - strand, within GFF4129at 10.039 kb on - strand, within GFF4129at 10.081 kb on - strand, within GFF4129at 10.081 kb on - strand, within GFF4129at 10.363 kb on + strand, within GFF4129at 10.466 kb on + strand, within GFF4129at 10.538 kb on + strand, within GFF4129at 10.538 kb on + strand, within GFF4129at 10.579 kb on + strand, within GFF4129at 10.579 kb on + strand, within GFF4129at 10.581 kb on + strand, within GFF4129at 10.581 kb on + strand, within GFF4129at 10.831 kb on - strandat 10.868 kb on - strandat 10.868 kb on - strandat 11.008 kb on + strandat 11.016 kb on + strandat 11.131 kb on - strandat 11.181 kb on - strandat 11.332 kb on + strandat 11.584 kb on - strandat 11.625 kb on + strandat 11.666 kb on + strandat 11.671 kb on + strandat 11.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 0.25 MOI
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9,906 + -0.1
10,018 - GFF4129 0.16 -0.4
10,039 - GFF4129 0.19 -2.1
10,081 - GFF4129 0.24 +0.2
10,081 - GFF4129 0.24 +0.1
10,363 + GFF4129 0.56 -0.6
10,466 + GFF4129 0.67 +0.0
10,538 + GFF4129 0.76 +0.1
10,538 + GFF4129 0.76 +0.3
10,579 + GFF4129 0.80 +0.2
10,579 + GFF4129 0.80 +0.4
10,581 + GFF4129 0.81 -0.3
10,581 + GFF4129 0.81 +0.2
10,831 - -0.3
10,868 - +0.2
10,868 - +0.1
11,008 + -0.3
11,016 + -0.1
11,131 - +0.4
11,181 - -0.4
11,332 + -0.8
11,584 - +0.1
11,625 + +0.2
11,666 + +0.0
11,671 + +0.7
11,687 - +1.1

Or see this region's nucleotide sequence