Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4031

Experiment: LB_plus_SM_buffer with 6C2_phage 0.25 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3745 and GFF3746 are separated by 401 nucleotidesGFF3746 and GFF4031 are separated by 302 nucleotidesGFF4031 and GFF3747 are separated by 73 nucleotides GFF3745 - virulence protein, at 13,069 to 13,182 GFF3745 GFF3746 - hypothetical protein, at 13,584 to 13,718 GFF3746 GFF4031 - tRNA-Pro-GGG, at 14,021 to 14,097 GFF4031 GFF3747 - FIG001881: hydrolase of alkaline phosphatase superfamily, at 14,171 to 15,931 GFF3747 Position (kb) 14 15Strain fitness (log2 ratio) -2 -1 0 1at 13.279 kb on - strandat 13.294 kb on + strandat 13.372 kb on - strandat 13.440 kb on - strandat 13.462 kb on + strandat 13.463 kb on - strandat 13.586 kb on - strandat 13.640 kb on + strand, within GFF3746at 13.837 kb on + strandat 13.838 kb on - strandat 13.838 kb on - strandat 14.111 kb on - strandat 14.259 kb on - strandat 14.423 kb on + strand, within GFF3747at 14.423 kb on + strand, within GFF3747at 14.520 kb on - strand, within GFF3747at 14.520 kb on - strand, within GFF3747at 14.724 kb on + strand, within GFF3747at 14.729 kb on - strand, within GFF3747at 14.982 kb on + strand, within GFF3747at 14.983 kb on - strand, within GFF3747at 14.983 kb on - strand, within GFF3747

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 0.25 MOI
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13,279 - -0.7
13,294 + -2.6
13,372 - -0.2
13,440 - -1.3
13,462 + +0.6
13,463 - -0.4
13,586 - +0.2
13,640 + GFF3746 0.41 +0.7
13,837 + +0.2
13,838 - -0.1
13,838 - +0.4
14,111 - -0.9
14,259 - +0.2
14,423 + GFF3747 0.14 -1.4
14,423 + GFF3747 0.14 -0.9
14,520 - GFF3747 0.20 -0.4
14,520 - GFF3747 0.20 -1.4
14,724 + GFF3747 0.31 -0.6
14,729 - GFF3747 0.32 -0.6
14,982 + GFF3747 0.46 -0.9
14,983 - GFF3747 0.46 -0.8
14,983 - GFF3747 0.46 -1.2

Or see this region's nucleotide sequence