Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2803

Experiment: LB_plus_SM_buffer with 6C2_phage 0.25 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2802 and GFF2803 are separated by 62 nucleotidesGFF2803 and GFF2804 are separated by 13 nucleotides GFF2802 - Cell volume regulation protein A, at 325,078 to 326,811 GFF2802 GFF2803 - Alanine racemase (EC 5.1.1.1) ## catabolic, at 326,874 to 327,944 GFF2803 GFF2804 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 327,958 to 329,256 GFF2804 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1at 325.987 kb on - strand, within GFF2802at 326.192 kb on + strand, within GFF2802at 326.526 kb on + strand, within GFF2802at 326.617 kb on + strand, within GFF2802at 326.761 kb on - strandat 327.130 kb on + strand, within GFF2803at 327.192 kb on + strand, within GFF2803at 327.228 kb on - strand, within GFF2803at 327.584 kb on - strand, within GFF2803at 327.584 kb on - strand, within GFF2803at 327.930 kb on + strandat 327.963 kb on + strandat 328.111 kb on + strand, within GFF2804at 328.224 kb on + strand, within GFF2804at 328.288 kb on + strand, within GFF2804at 328.289 kb on - strand, within GFF2804at 328.336 kb on - strand, within GFF2804at 328.341 kb on + strand, within GFF2804at 328.473 kb on + strand, within GFF2804at 328.512 kb on - strand, within GFF2804at 328.512 kb on - strand, within GFF2804at 328.593 kb on + strand, within GFF2804at 328.818 kb on - strand, within GFF2804at 328.844 kb on - strand, within GFF2804at 328.915 kb on - strand, within GFF2804at 328.915 kb on - strand, within GFF2804at 328.915 kb on - strand, within GFF2804at 328.917 kb on - strand, within GFF2804

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 0.25 MOI
remove
325,987 - GFF2802 0.52 -0.5
326,192 + GFF2802 0.64 +0.5
326,526 + GFF2802 0.84 -1.6
326,617 + GFF2802 0.89 +0.1
326,761 - -0.7
327,130 + GFF2803 0.24 -0.2
327,192 + GFF2803 0.30 -1.9
327,228 - GFF2803 0.33 +0.8
327,584 - GFF2803 0.66 +0.6
327,584 - GFF2803 0.66 +0.3
327,930 + -0.1
327,963 + -1.1
328,111 + GFF2804 0.12 +0.2
328,224 + GFF2804 0.20 +0.1
328,288 + GFF2804 0.25 -0.5
328,289 - GFF2804 0.25 -1.4
328,336 - GFF2804 0.29 -0.9
328,341 + GFF2804 0.29 +0.5
328,473 + GFF2804 0.40 -0.7
328,512 - GFF2804 0.43 +0.6
328,512 - GFF2804 0.43 +0.4
328,593 + GFF2804 0.49 +0.2
328,818 - GFF2804 0.66 +0.9
328,844 - GFF2804 0.68 -0.8
328,915 - GFF2804 0.74 +0.3
328,915 - GFF2804 0.74 +0.2
328,915 - GFF2804 0.74 +0.0
328,917 - GFF2804 0.74 -0.3

Or see this region's nucleotide sequence