Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2194

Experiment: LB_plus_SM_buffer with 6C2_phage 0.25 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2193 and GFF2194 are separated by 127 nucleotidesGFF2194 and GFF2195 are separated by 62 nucleotides GFF2193 - FIG01200701: possible membrane protein, at 44,359 to 45,402 GFF2193 GFF2194 - FIG01046050: hypothetical protein, at 45,530 to 45,760 GFF2194 GFF2195 - Transketolase (EC 2.2.1.1), at 45,823 to 47,823 GFF2195 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1at 44.624 kb on + strand, within GFF2193at 44.804 kb on + strand, within GFF2193at 44.812 kb on - strand, within GFF2193at 45.058 kb on - strand, within GFF2193at 45.094 kb on + strand, within GFF2193at 45.097 kb on - strand, within GFF2193at 45.156 kb on - strand, within GFF2193at 45.174 kb on + strand, within GFF2193at 45.354 kb on + strandat 45.382 kb on - strandat 45.464 kb on + strandat 45.474 kb on + strandat 45.613 kb on - strand, within GFF2194at 45.838 kb on + strandat 45.962 kb on + strandat 45.962 kb on + strandat 45.983 kb on - strandat 46.138 kb on - strand, within GFF2195at 46.174 kb on - strand, within GFF2195at 46.508 kb on + strand, within GFF2195at 46.538 kb on + strand, within GFF2195at 46.539 kb on - strand, within GFF2195at 46.614 kb on + strand, within GFF2195at 46.617 kb on - strand, within GFF2195at 46.617 kb on - strand, within GFF2195at 46.662 kb on + strand, within GFF2195

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 0.25 MOI
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44,624 + GFF2193 0.25 -2.9
44,804 + GFF2193 0.43 +0.2
44,812 - GFF2193 0.43 -0.5
45,058 - GFF2193 0.67 -0.6
45,094 + GFF2193 0.70 -0.7
45,097 - GFF2193 0.71 +0.2
45,156 - GFF2193 0.76 -0.5
45,174 + GFF2193 0.78 -0.3
45,354 + +0.5
45,382 - -0.1
45,464 + +0.0
45,474 + +0.2
45,613 - GFF2194 0.36 -0.6
45,838 + -0.0
45,962 + -0.4
45,962 + -2.5
45,983 - +0.3
46,138 - GFF2195 0.16 +0.1
46,174 - GFF2195 0.18 -0.3
46,508 + GFF2195 0.34 -0.4
46,538 + GFF2195 0.36 +0.7
46,539 - GFF2195 0.36 +0.3
46,614 + GFF2195 0.40 -0.1
46,617 - GFF2195 0.40 -0.6
46,617 - GFF2195 0.40 -0.9
46,662 + GFF2195 0.42 -0.0

Or see this region's nucleotide sequence