Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2141

Experiment: LB_plus_SM_buffer with 6C2_phage 0.25 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2140 and GFF2141 are separated by 122 nucleotidesGFF2141 and GFF2142 are separated by 199 nucleotidesGFF2142 and GFF2143 are separated by 7 nucleotides GFF2140 - TldD protein, part of TldE/TldD proteolytic complex, at 31,124 to 32,569 GFF2140 GFF2141 - LysR family transcriptional regulator QseA, at 32,692 to 33,603 GFF2141 GFF2142 - probable membrane protein YPO3684, at 33,803 to 34,006 GFF2142 GFF2143 - Membrane fusion component of tripartite multidrug resistance system, at 34,014 to 34,946 GFF2143 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1at 31.751 kb on + strand, within GFF2140at 31.962 kb on + strand, within GFF2140at 31.962 kb on + strand, within GFF2140at 31.963 kb on - strand, within GFF2140at 32.053 kb on + strand, within GFF2140at 32.082 kb on - strand, within GFF2140at 32.117 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.224 kb on + strand, within GFF2140at 32.224 kb on + strand, within GFF2140at 32.224 kb on + strand, within GFF2140at 32.225 kb on - strand, within GFF2140at 32.225 kb on - strand, within GFF2140at 32.282 kb on + strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.354 kb on + strand, within GFF2140at 32.458 kb on + strandat 32.910 kb on - strand, within GFF2141at 32.961 kb on + strand, within GFF2141at 33.046 kb on - strand, within GFF2141at 33.047 kb on + strand, within GFF2141at 33.345 kb on + strand, within GFF2141at 33.345 kb on + strand, within GFF2141at 33.346 kb on - strand, within GFF2141at 33.565 kb on - strandat 34.053 kb on - strandat 34.107 kb on + strandat 34.107 kb on + strandat 34.161 kb on - strand, within GFF2143at 34.195 kb on + strand, within GFF2143at 34.195 kb on + strand, within GFF2143at 34.196 kb on - strand, within GFF2143at 34.294 kb on + strand, within GFF2143at 34.295 kb on - strand, within GFF2143at 34.303 kb on - strand, within GFF2143at 34.310 kb on - strand, within GFF2143at 34.481 kb on + strand, within GFF2143at 34.599 kb on + strand, within GFF2143at 34.599 kb on + strand, within GFF2143

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 0.25 MOI
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31,751 + GFF2140 0.43 +0.2
31,962 + GFF2140 0.58 -0.3
31,962 + GFF2140 0.58 -1.6
31,963 - GFF2140 0.58 -2.5
32,053 + GFF2140 0.64 +0.3
32,082 - GFF2140 0.66 -0.8
32,117 + GFF2140 0.69 -2.4
32,222 + GFF2140 0.76 +1.1
32,222 + GFF2140 0.76 +0.1
32,222 + GFF2140 0.76 +0.6
32,222 + GFF2140 0.76 +0.7
32,223 - GFF2140 0.76 +0.9
32,223 - GFF2140 0.76 +0.2
32,223 - GFF2140 0.76 +0.4
32,223 - GFF2140 0.76 +0.8
32,224 + GFF2140 0.76 -1.1
32,224 + GFF2140 0.76 -0.3
32,224 + GFF2140 0.76 +0.2
32,225 - GFF2140 0.76 +0.2
32,225 - GFF2140 0.76 +0.1
32,282 + GFF2140 0.80 +0.7
32,283 - GFF2140 0.80 +0.8
32,283 - GFF2140 0.80 +0.2
32,283 - GFF2140 0.80 +1.0
32,283 - GFF2140 0.80 +0.2
32,283 - GFF2140 0.80 -1.0
32,283 - GFF2140 0.80 +0.3
32,354 + GFF2140 0.85 -0.3
32,458 + +0.7
32,910 - GFF2141 0.24 -0.1
32,961 + GFF2141 0.29 +0.4
33,046 - GFF2141 0.39 -0.4
33,047 + GFF2141 0.39 +0.3
33,345 + GFF2141 0.72 +0.4
33,345 + GFF2141 0.72 +0.2
33,346 - GFF2141 0.72 +1.0
33,565 - -0.1
34,053 - -0.8
34,107 + +0.3
34,107 + -0.2
34,161 - GFF2143 0.16 +0.3
34,195 + GFF2143 0.19 -0.1
34,195 + GFF2143 0.19 -0.5
34,196 - GFF2143 0.20 -1.2
34,294 + GFF2143 0.30 +0.5
34,295 - GFF2143 0.30 +0.0
34,303 - GFF2143 0.31 -1.1
34,310 - GFF2143 0.32 +0.3
34,481 + GFF2143 0.50 +0.9
34,599 + GFF2143 0.63 +0.3
34,599 + GFF2143 0.63 -1.2

Or see this region's nucleotide sequence