Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2050

Experiment: LB_plus_SM_buffer with 6C2_phage 0.25 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2047 and GFF2048 are separated by 40 nucleotidesGFF2048 and GFF2049 are separated by 148 nucleotidesGFF2049 and GFF2050 overlap by 4 nucleotidesGFF2050 and GFF2051 are separated by 82 nucleotides GFF2047 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 12,911 to 14,638 GFF2047 GFF2048 - PTS system, glucose-specific IIA component (EC 2.7.1.69), at 14,679 to 15,188 GFF2048 GFF2049 - FIG01045978: hypothetical protein, at 15,337 to 15,576 GFF2049 GFF2050 - Pyridoxal kinase (EC 2.7.1.35), at 15,573 to 16,439 GFF2050 GFF2051 - Predicted transcriptional regulator of pyridoxine metabolism, at 16,522 to 17,814 GFF2051 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1at 14.660 kb on + strandat 15.099 kb on - strand, within GFF2048at 15.238 kb on + strandat 15.493 kb on - strand, within GFF2049at 15.945 kb on + strand, within GFF2050at 15.945 kb on + strand, within GFF2050at 15.945 kb on + strand, within GFF2050at 16.019 kb on - strand, within GFF2050at 16.062 kb on - strand, within GFF2050at 16.062 kb on - strand, within GFF2050at 16.062 kb on - strand, within GFF2050at 16.139 kb on - strand, within GFF2050at 16.307 kb on + strand, within GFF2050at 16.480 kb on - strandat 16.670 kb on - strand, within GFF2051at 16.672 kb on - strand, within GFF2051at 16.971 kb on + strand, within GFF2051at 17.055 kb on + strand, within GFF2051at 17.261 kb on + strand, within GFF2051at 17.351 kb on + strand, within GFF2051at 17.351 kb on + strand, within GFF2051at 17.394 kb on + strand, within GFF2051at 17.394 kb on + strand, within GFF2051

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 0.25 MOI
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14,660 + -2.1
15,099 - GFF2048 0.82 -2.0
15,238 + -0.3
15,493 - GFF2049 0.65 +0.2
15,945 + GFF2050 0.43 -0.9
15,945 + GFF2050 0.43 -0.3
15,945 + GFF2050 0.43 -0.2
16,019 - GFF2050 0.51 +0.2
16,062 - GFF2050 0.56 -1.3
16,062 - GFF2050 0.56 -1.5
16,062 - GFF2050 0.56 -0.3
16,139 - GFF2050 0.65 +0.0
16,307 + GFF2050 0.85 +0.8
16,480 - +0.0
16,670 - GFF2051 0.11 -0.8
16,672 - GFF2051 0.12 -1.8
16,971 + GFF2051 0.35 -0.9
17,055 + GFF2051 0.41 -0.9
17,261 + GFF2051 0.57 -1.1
17,351 + GFF2051 0.64 -0.7
17,351 + GFF2051 0.64 -1.8
17,394 + GFF2051 0.67 -0.9
17,394 + GFF2051 0.67 -1.4

Or see this region's nucleotide sequence