Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4289

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4288 and Psyr_4289 are separated by 172 nucleotidesPsyr_4289 and Psyr_4290 are separated by 4 nucleotides Psyr_4288: Psyr_4288 - protein of unknown function DUF894:Bacterial protein of unknown function DUF894, at 5,114,376 to 5,115,677 _4288 Psyr_4289: Psyr_4289 - Protein of unknown function Zinc binding 2, at 5,115,850 to 5,116,740 _4289 Psyr_4290: Psyr_4290 - conserved domain protein, at 5,116,745 to 5,117,734 _4290 Position (kb) 5115 5116 5117Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5114.896 kb on - strand, within Psyr_4288at 5114.902 kb on - strand, within Psyr_4288at 5114.928 kb on + strand, within Psyr_4288at 5114.928 kb on + strand, within Psyr_4288at 5114.929 kb on - strand, within Psyr_4288at 5114.929 kb on - strand, within Psyr_4288at 5114.929 kb on - strand, within Psyr_4288at 5114.951 kb on + strand, within Psyr_4288at 5114.952 kb on - strand, within Psyr_4288at 5115.144 kb on + strand, within Psyr_4288at 5115.144 kb on + strand, within Psyr_4288at 5115.145 kb on - strand, within Psyr_4288at 5115.145 kb on - strand, within Psyr_4288at 5115.232 kb on - strand, within Psyr_4288at 5115.232 kb on - strand, within Psyr_4288at 5115.232 kb on - strand, within Psyr_4288at 5115.467 kb on + strand, within Psyr_4288at 5115.468 kb on - strand, within Psyr_4288at 5115.747 kb on + strandat 5115.747 kb on + strandat 5115.747 kb on + strandat 5115.747 kb on + strandat 5115.747 kb on + strandat 5115.747 kb on + strandat 5115.747 kb on + strandat 5115.747 kb on + strandat 5115.748 kb on - strandat 5115.748 kb on - strandat 5115.748 kb on - strandat 5115.748 kb on - strandat 5115.821 kb on + strandat 5115.821 kb on + strandat 5115.821 kb on + strandat 5115.821 kb on + strandat 5115.821 kb on + strandat 5115.822 kb on - strandat 5115.884 kb on + strandat 5115.885 kb on - strandat 5115.885 kb on - strandat 5115.885 kb on - strandat 5116.180 kb on + strand, within Psyr_4289at 5116.180 kb on + strand, within Psyr_4289at 5116.180 kb on + strand, within Psyr_4289at 5116.181 kb on - strand, within Psyr_4289at 5116.181 kb on - strand, within Psyr_4289at 5116.261 kb on + strand, within Psyr_4289at 5116.262 kb on - strand, within Psyr_4289at 5116.286 kb on - strand, within Psyr_4289at 5116.286 kb on - strand, within Psyr_4289at 5116.286 kb on - strand, within Psyr_4289at 5116.354 kb on + strand, within Psyr_4289at 5116.355 kb on - strand, within Psyr_4289at 5116.355 kb on - strand, within Psyr_4289at 5116.355 kb on - strand, within Psyr_4289at 5116.463 kb on + strand, within Psyr_4289at 5116.463 kb on + strand, within Psyr_4289at 5116.464 kb on - strand, within Psyr_4289at 5116.513 kb on + strand, within Psyr_4289at 5116.514 kb on - strand, within Psyr_4289at 5116.667 kb on + strandat 5116.667 kb on + strandat 5116.667 kb on + strandat 5116.668 kb on - strandat 5116.716 kb on + strandat 5116.716 kb on + strandat 5116.716 kb on + strandat 5116.961 kb on + strand, within Psyr_4290at 5117.318 kb on + strand, within Psyr_4290at 5117.343 kb on - strand, within Psyr_4290at 5117.343 kb on - strand, within Psyr_4290at 5117.349 kb on - strand, within Psyr_4290at 5117.415 kb on - strand, within Psyr_4290at 5117.477 kb on + strand, within Psyr_4290at 5117.478 kb on - strand, within Psyr_4290at 5117.478 kb on - strand, within Psyr_4290at 5117.498 kb on + strand, within Psyr_4290at 5117.498 kb on + strand, within Psyr_4290at 5117.498 kb on + strand, within Psyr_4290at 5117.499 kb on - strand, within Psyr_4290at 5117.499 kb on - strand, within Psyr_4290at 5117.499 kb on - strand, within Psyr_4290at 5117.499 kb on - strand, within Psyr_4290at 5117.499 kb on - strand, within Psyr_4290at 5117.528 kb on - strand, within Psyr_4290at 5117.601 kb on - strand, within Psyr_4290at 5117.601 kb on - strand, within Psyr_4290at 5117.609 kb on + strand, within Psyr_4290at 5117.610 kb on - strand, within Psyr_4290at 5117.610 kb on - strand, within Psyr_4290at 5117.610 kb on - strand, within Psyr_4290

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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5,114,896 - Psyr_4288 0.40 +0.2
5,114,902 - Psyr_4288 0.40 -0.8
5,114,928 + Psyr_4288 0.42 +1.3
5,114,928 + Psyr_4288 0.42 -0.1
5,114,929 - Psyr_4288 0.42 +0.4
5,114,929 - Psyr_4288 0.42 +0.2
5,114,929 - Psyr_4288 0.42 -0.0
5,114,951 + Psyr_4288 0.44 -0.5
5,114,952 - Psyr_4288 0.44 -0.2
5,115,144 + Psyr_4288 0.59 +0.5
5,115,144 + Psyr_4288 0.59 -0.8
5,115,145 - Psyr_4288 0.59 +0.2
5,115,145 - Psyr_4288 0.59 -1.7
5,115,232 - Psyr_4288 0.66 -0.6
5,115,232 - Psyr_4288 0.66 -0.1
5,115,232 - Psyr_4288 0.66 +0.1
5,115,467 + Psyr_4288 0.84 -1.2
5,115,468 - Psyr_4288 0.84 -0.6
5,115,747 + -1.2
5,115,747 + +0.2
5,115,747 + -0.9
5,115,747 + +0.0
5,115,747 + -0.0
5,115,747 + -0.3
5,115,747 + +2.8
5,115,747 + -0.3
5,115,748 - +0.9
5,115,748 - +1.1
5,115,748 - +0.3
5,115,748 - +0.2
5,115,821 + -0.1
5,115,821 + -0.5
5,115,821 + +0.8
5,115,821 + -0.0
5,115,821 + -0.4
5,115,822 - -1.0
5,115,884 + -0.2
5,115,885 - +1.6
5,115,885 - -0.4
5,115,885 - +0.8
5,116,180 + Psyr_4289 0.37 -1.7
5,116,180 + Psyr_4289 0.37 -0.1
5,116,180 + Psyr_4289 0.37 -0.4
5,116,181 - Psyr_4289 0.37 +0.4
5,116,181 - Psyr_4289 0.37 +0.6
5,116,261 + Psyr_4289 0.46 -0.4
5,116,262 - Psyr_4289 0.46 +1.0
5,116,286 - Psyr_4289 0.49 +0.4
5,116,286 - Psyr_4289 0.49 -0.5
5,116,286 - Psyr_4289 0.49 +0.9
5,116,354 + Psyr_4289 0.57 -1.4
5,116,355 - Psyr_4289 0.57 +0.7
5,116,355 - Psyr_4289 0.57 +1.5
5,116,355 - Psyr_4289 0.57 -0.2
5,116,463 + Psyr_4289 0.69 +0.1
5,116,463 + Psyr_4289 0.69 -0.4
5,116,464 - Psyr_4289 0.69 +0.4
5,116,513 + Psyr_4289 0.74 +0.7
5,116,514 - Psyr_4289 0.75 -0.5
5,116,667 + +0.2
5,116,667 + +0.5
5,116,667 + +0.8
5,116,668 - +0.2
5,116,716 + -0.5
5,116,716 + -0.9
5,116,716 + +0.4
5,116,961 + Psyr_4290 0.22 -0.4
5,117,318 + Psyr_4290 0.58 +0.6
5,117,343 - Psyr_4290 0.60 -0.2
5,117,343 - Psyr_4290 0.60 -0.7
5,117,349 - Psyr_4290 0.61 -0.1
5,117,415 - Psyr_4290 0.68 +0.5
5,117,477 + Psyr_4290 0.74 -1.2
5,117,478 - Psyr_4290 0.74 +0.3
5,117,478 - Psyr_4290 0.74 -1.1
5,117,498 + Psyr_4290 0.76 +0.3
5,117,498 + Psyr_4290 0.76 -0.2
5,117,498 + Psyr_4290 0.76 -0.5
5,117,499 - Psyr_4290 0.76 -0.6
5,117,499 - Psyr_4290 0.76 +0.3
5,117,499 - Psyr_4290 0.76 +0.8
5,117,499 - Psyr_4290 0.76 +0.5
5,117,499 - Psyr_4290 0.76 +0.2
5,117,528 - Psyr_4290 0.79 +0.0
5,117,601 - Psyr_4290 0.86 -1.7
5,117,601 - Psyr_4290 0.86 +0.0
5,117,609 + Psyr_4290 0.87 +0.1
5,117,610 - Psyr_4290 0.87 -0.3
5,117,610 - Psyr_4290 0.87 -1.0
5,117,610 - Psyr_4290 0.87 -1.9

Or see this region's nucleotide sequence