Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4139 and Psyr_4140 overlap by 1 nucleotides Psyr_4140 and Psyr_4141 overlap by 1 nucleotides Psyr_4141 and Psyr_4142 are separated by 304 nucleotides
Psyr_4139: Psyr_4139 - Mce4/Rv3499c/MTV023.06c protein, at 4,928,661 to 4,929,128
_4139
Psyr_4140: Psyr_4140 - Protein of unknown function DUF140, at 4,929,128 to 4,929,925
_4140
Psyr_4141: Psyr_4141 - ABC transporter, at 4,929,925 to 4,930,734
_4141
Psyr_4142: Psyr_4142 - KpsF/GutQ, at 4,931,039 to 4,932,013
_4142
Position (kb) 4929
4930
4931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.985 kb on - strand, within Psyr_4139 at 4928.985 kb on - strand, within Psyr_4139 at 4929.001 kb on + strand, within Psyr_4139 at 4929.002 kb on - strand, within Psyr_4139 at 4929.008 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.160 kb on + strand at 4929.290 kb on + strand, within Psyr_4140 at 4929.291 kb on - strand, within Psyr_4140 at 4929.341 kb on - strand, within Psyr_4140 at 4929.372 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.490 kb on - strand, within Psyr_4140 at 4929.672 kb on + strand, within Psyr_4140 at 4929.672 kb on + strand, within Psyr_4140 at 4929.862 kb on + strand at 4929.917 kb on - strand at 4929.940 kb on + strand at 4929.941 kb on - strand at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.018 kb on - strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.444 kb on - strand, within Psyr_4141 at 4930.510 kb on + strand, within Psyr_4141 at 4930.715 kb on + strand at 4930.736 kb on + strand at 4930.736 kb on + strand at 4930.737 kb on - strand at 4930.737 kb on - strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.825 kb on + strand at 4930.825 kb on + strand at 4930.826 kb on - strand at 4930.826 kb on - strand at 4930.920 kb on + strand at 4930.934 kb on + strand at 4930.934 kb on + strand at 4930.935 kb on - strand at 4930.938 kb on + strand at 4930.939 kb on - strand at 4930.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 4,928,955 + Psyr_4139 0.63 -0.9 4,928,955 + Psyr_4139 0.63 -0.9 4,928,955 + Psyr_4139 0.63 -0.5 4,928,956 - Psyr_4139 0.63 +0.7 4,928,956 - Psyr_4139 0.63 -2.4 4,928,985 - Psyr_4139 0.69 -1.5 4,928,985 - Psyr_4139 0.69 -3.7 4,929,001 + Psyr_4139 0.73 -0.9 4,929,002 - Psyr_4139 0.73 -1.3 4,929,008 + Psyr_4139 0.74 -0.9 4,929,010 + Psyr_4139 0.75 -1.1 4,929,010 + Psyr_4139 0.75 -0.6 4,929,010 + Psyr_4139 0.75 -2.3 4,929,010 + Psyr_4139 0.75 -0.9 4,929,011 - Psyr_4139 0.75 -1.3 4,929,011 - Psyr_4139 0.75 -2.2 4,929,160 + +0.7 4,929,290 + Psyr_4140 0.20 -1.5 4,929,291 - Psyr_4140 0.20 +0.1 4,929,341 - Psyr_4140 0.27 +1.3 4,929,372 + Psyr_4140 0.31 +0.7 4,929,489 + Psyr_4140 0.45 -0.6 4,929,489 + Psyr_4140 0.45 -2.4 4,929,489 + Psyr_4140 0.45 -2.1 4,929,489 + Psyr_4140 0.45 -0.4 4,929,489 + Psyr_4140 0.45 +1.5 4,929,490 - Psyr_4140 0.45 -1.0 4,929,672 + Psyr_4140 0.68 +0.7 4,929,672 + Psyr_4140 0.68 +0.9 4,929,862 + -0.2 4,929,917 - +0.7 4,929,940 + -1.4 4,929,941 - +0.6 4,930,017 + Psyr_4141 0.11 -1.8 4,930,017 + Psyr_4141 0.11 -1.3 4,930,017 + Psyr_4141 0.11 -0.9 4,930,018 - Psyr_4141 0.11 -0.3 4,930,088 + Psyr_4141 0.20 -0.6 4,930,088 + Psyr_4141 0.20 -0.8 4,930,089 - Psyr_4141 0.20 -2.1 4,930,089 - Psyr_4141 0.20 -1.9 4,930,089 - Psyr_4141 0.20 -0.3 4,930,089 - Psyr_4141 0.20 -1.4 4,930,232 + Psyr_4141 0.38 -2.3 4,930,232 + Psyr_4141 0.38 -3.6 4,930,232 + Psyr_4141 0.38 -0.6 4,930,233 - Psyr_4141 0.38 -2.4 4,930,233 - Psyr_4141 0.38 -1.0 4,930,233 - Psyr_4141 0.38 -1.9 4,930,233 - Psyr_4141 0.38 -0.0 4,930,233 - Psyr_4141 0.38 -1.1 4,930,233 - Psyr_4141 0.38 -0.6 4,930,444 - Psyr_4141 0.64 -1.3 4,930,510 + Psyr_4141 0.72 +0.2 4,930,715 + -1.5 4,930,736 + -1.3 4,930,736 + +2.0 4,930,737 - -1.0 4,930,737 - -2.1 4,930,823 + -3.0 4,930,823 + -1.9 4,930,823 + -0.9 4,930,823 + -0.1 4,930,823 + +0.2 4,930,823 + +2.3 4,930,823 + -0.4 4,930,823 + +0.5 4,930,824 - +0.3 4,930,824 - -0.6 4,930,824 - -1.1 4,930,824 - -1.4 4,930,824 - -0.7 4,930,824 - +0.2 4,930,824 - +0.7 4,930,825 + +2.7 4,930,825 + -2.4 4,930,826 - -0.4 4,930,826 - +0.3 4,930,920 + -1.3 4,930,934 + +1.1 4,930,934 + -0.5 4,930,935 - -1.3 4,930,938 + -0.2 4,930,939 - +1.2 4,930,939 - -1.0
Or see this region's nucleotide sequence