Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3167

Experiment: KB with Flavone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3165 and Psyr_3166 overlap by 15 nucleotidesPsyr_3166 and Psyr_3167 are separated by 16 nucleotidesPsyr_3167 and Psyr_3168 are separated by 234 nucleotidesPsyr_3168 and Psyr_3169 are separated by 1 nucleotidesPsyr_3169 and Psyr_3170 overlap by 1 nucleotides Psyr_3165: Psyr_3165 - transcriptional regulator, LysR family, at 3,794,140 to 3,795,048 _3165 Psyr_3166: Psyr_3166 - ABC transporter, periplasmic substrate-binding protein, putative, at 3,795,034 to 3,795,813 _3166 Psyr_3167: Psyr_3167 - Citrate-proton symport, at 3,795,830 to 3,797,131 _3167 Psyr_3168: Psyr_3168 - DsrE-like protein, at 3,797,366 to 3,797,758 _3168 Psyr_3169: Psyr_3169 - DsrE-like protein, at 3,797,760 to 3,798,122 _3169 Psyr_3170: Psyr_3170 - DsrH like protein, at 3,798,122 to 3,798,421 _3170 Position (kb) 3795 3796 3797 3798Strain fitness (log2 ratio) -2 -1 0 1 2at 3794.952 kb on - strand, within Psyr_3165at 3795.362 kb on + strand, within Psyr_3166at 3795.363 kb on - strand, within Psyr_3166at 3795.363 kb on - strand, within Psyr_3166at 3795.363 kb on - strand, within Psyr_3166at 3795.386 kb on + strand, within Psyr_3166at 3795.420 kb on + strand, within Psyr_3166at 3795.421 kb on - strand, within Psyr_3166at 3795.800 kb on + strandat 3795.800 kb on + strandat 3795.801 kb on - strandat 3795.801 kb on - strandat 3795.818 kb on - strandat 3795.831 kb on + strandat 3796.009 kb on - strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.126 kb on + strand, within Psyr_3167at 3796.261 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.363 kb on - strand, within Psyr_3167at 3796.645 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.890 kb on + strand, within Psyr_3167at 3796.890 kb on + strand, within Psyr_3167at 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.017 kb on - strandat 3797.017 kb on - strandat 3797.111 kb on + strandat 3797.151 kb on + strandat 3797.151 kb on + strandat 3797.151 kb on + strandat 3797.151 kb on + strandat 3797.151 kb on + strandat 3797.152 kb on - strandat 3797.152 kb on - strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.155 kb on - strandat 3797.155 kb on - strandat 3797.155 kb on - strandat 3797.164 kb on + strandat 3797.164 kb on + strandat 3797.165 kb on - strandat 3797.209 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml
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3,794,952 - Psyr_3165 0.89 +2.3
3,795,362 + Psyr_3166 0.42 +0.2
3,795,363 - Psyr_3166 0.42 +0.1
3,795,363 - Psyr_3166 0.42 -0.2
3,795,363 - Psyr_3166 0.42 +0.3
3,795,386 + Psyr_3166 0.45 +2.5
3,795,420 + Psyr_3166 0.49 +0.1
3,795,421 - Psyr_3166 0.50 +1.0
3,795,800 + -0.1
3,795,800 + -1.7
3,795,801 - -0.4
3,795,801 - +0.3
3,795,818 - +0.0
3,795,831 + +0.3
3,796,009 - Psyr_3167 0.14 -0.2
3,796,083 + Psyr_3167 0.19 -1.5
3,796,083 + Psyr_3167 0.19 -0.3
3,796,083 + Psyr_3167 0.19 -0.1
3,796,084 - Psyr_3167 0.20 +0.3
3,796,084 - Psyr_3167 0.20 +0.3
3,796,084 - Psyr_3167 0.20 -0.5
3,796,084 - Psyr_3167 0.20 +2.3
3,796,084 - Psyr_3167 0.20 -0.0
3,796,084 - Psyr_3167 0.20 -0.6
3,796,084 - Psyr_3167 0.20 +0.2
3,796,126 + Psyr_3167 0.23 +0.2
3,796,261 + Psyr_3167 0.33 -0.0
3,796,347 + Psyr_3167 0.40 +1.1
3,796,347 + Psyr_3167 0.40 +2.2
3,796,347 + Psyr_3167 0.40 -0.2
3,796,347 + Psyr_3167 0.40 +1.0
3,796,347 + Psyr_3167 0.40 -0.9
3,796,347 + Psyr_3167 0.40 +0.7
3,796,347 + Psyr_3167 0.40 -0.7
3,796,347 + Psyr_3167 0.40 -0.1
3,796,347 + Psyr_3167 0.40 +0.9
3,796,347 + Psyr_3167 0.40 +1.1
3,796,347 + Psyr_3167 0.40 +0.8
3,796,348 - Psyr_3167 0.40 -0.7
3,796,348 - Psyr_3167 0.40 -0.0
3,796,348 - Psyr_3167 0.40 +0.1
3,796,348 - Psyr_3167 0.40 +1.3
3,796,348 - Psyr_3167 0.40 +0.7
3,796,348 - Psyr_3167 0.40 +0.2
3,796,348 - Psyr_3167 0.40 +0.7
3,796,348 - Psyr_3167 0.40 +0.6
3,796,348 - Psyr_3167 0.40 +0.3
3,796,348 - Psyr_3167 0.40 -0.4
3,796,348 - Psyr_3167 0.40 +2.7
3,796,348 - Psyr_3167 0.40 -0.7
3,796,348 - Psyr_3167 0.40 +0.5
3,796,348 - Psyr_3167 0.40 +1.0
3,796,348 - Psyr_3167 0.40 +0.8
3,796,348 - Psyr_3167 0.40 +0.1
3,796,363 - Psyr_3167 0.41 +0.3
3,796,645 + Psyr_3167 0.63 +1.1
3,796,665 + Psyr_3167 0.64 +1.3
3,796,665 + Psyr_3167 0.64 -1.0
3,796,665 + Psyr_3167 0.64 -0.2
3,796,665 + Psyr_3167 0.64 -0.5
3,796,704 + Psyr_3167 0.67 -2.0
3,796,704 + Psyr_3167 0.67 +0.3
3,796,704 + Psyr_3167 0.67 -0.6
3,796,705 - Psyr_3167 0.67 +0.6
3,796,705 - Psyr_3167 0.67 +0.6
3,796,705 - Psyr_3167 0.67 +0.3
3,796,890 + Psyr_3167 0.81 +0.8
3,796,890 + Psyr_3167 0.81 +0.5
3,797,016 + +1.3
3,797,016 + +0.6
3,797,016 + +0.3
3,797,016 + +0.5
3,797,016 + -0.2
3,797,016 + +0.6
3,797,017 - -0.7
3,797,017 - -1.0
3,797,111 + -1.4
3,797,151 + +0.3
3,797,151 + -0.3
3,797,151 + +0.5
3,797,151 + -0.6
3,797,151 + -1.1
3,797,152 - -1.0
3,797,152 - +0.4
3,797,154 + -0.1
3,797,154 + -0.1
3,797,155 - +1.8
3,797,155 - -0.5
3,797,155 - +0.0
3,797,164 + +0.3
3,797,164 + +0.5
3,797,165 - -0.1
3,797,209 + +0.8

Or see this region's nucleotide sequence