Experiment: KB with Flavone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0543 and Psyr_0544 are separated by 426 nucleotides Psyr_0544 and Psyr_0545 are separated by 431 nucleotides
Psyr_0543: Psyr_0543 - Type I secretion outer membrane protein, TolC, at 613,307 to 614,746
_0543
Psyr_0544: Psyr_0544 - hydroxymethylpyrimidine synthase, at 615,173 to 617,062
_0544
Psyr_0545: Psyr_0545 - Permease for cytosine/purines, uracil, thiamine, allantoin, at 617,494 to 618,783
_0545
Position (kb) 615
616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 614.173 kb on - strand, within Psyr_0543 at 614.173 kb on - strand, within Psyr_0543 at 614.306 kb on + strand, within Psyr_0543 at 614.306 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.640 kb on + strand at 614.774 kb on - strand at 614.777 kb on + strand at 614.777 kb on + strand at 614.778 kb on - strand at 614.814 kb on + strand at 614.815 kb on - strand at 614.815 kb on - strand at 614.815 kb on - strand at 614.857 kb on + strand at 614.876 kb on - strand at 614.904 kb on + strand at 614.904 kb on + strand at 614.905 kb on - strand at 614.937 kb on + strand at 614.937 kb on + strand at 614.937 kb on + strand at 615.062 kb on + strand at 615.142 kb on - strand at 615.142 kb on - strand at 615.142 kb on - strand at 615.142 kb on - strand at 615.142 kb on - strand at 615.142 kb on - strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.179 kb on - strand at 615.179 kb on - strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.267 kb on - strand at 615.371 kb on + strand, within Psyr_0544 at 615.371 kb on + strand, within Psyr_0544 at 615.372 kb on - strand, within Psyr_0544 at 615.372 kb on - strand, within Psyr_0544 at 615.372 kb on - strand, within Psyr_0544 at 615.606 kb on - strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.642 kb on - strand, within Psyr_0544 at 615.642 kb on - strand, within Psyr_0544 at 615.733 kb on + strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.044 kb on - strand, within Psyr_0544 at 616.044 kb on - strand, within Psyr_0544 at 616.139 kb on + strand, within Psyr_0544 at 616.139 kb on + strand, within Psyr_0544 at 616.139 kb on + strand, within Psyr_0544 at 616.140 kb on - strand, within Psyr_0544 at 616.140 kb on - strand, within Psyr_0544 at 616.172 kb on + strand, within Psyr_0544 at 616.172 kb on + strand, within Psyr_0544 at 616.271 kb on + strand, within Psyr_0544 at 616.271 kb on + strand, within Psyr_0544 at 616.272 kb on - strand, within Psyr_0544 at 616.532 kb on + strand, within Psyr_0544 at 616.532 kb on + strand, within Psyr_0544 at 616.533 kb on - strand, within Psyr_0544 at 616.637 kb on + strand, within Psyr_0544 at 616.637 kb on + strand, within Psyr_0544 at 616.637 kb on + strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.980 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.061 kb on - strand at 617.081 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.117 kb on + strand at 617.118 kb on - strand at 617.172 kb on + strand at 617.173 kb on - strand at 617.189 kb on + strand at 617.189 kb on + strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.401 kb on + strand at 617.499 kb on + strand at 617.500 kb on - strand at 617.500 kb on - strand at 617.500 kb on - strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.513 kb on - strand at 617.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Flavone 0.125 mg/ml remove 614,173 - Psyr_0543 0.60 -1.2 614,173 - Psyr_0543 0.60 +0.5 614,306 + Psyr_0543 0.69 -0.6 614,306 + Psyr_0543 0.69 -1.4 614,316 + Psyr_0543 0.70 -1.4 614,316 + Psyr_0543 0.70 -2.0 614,316 + Psyr_0543 0.70 -1.6 614,317 - Psyr_0543 0.70 +0.8 614,317 - Psyr_0543 0.70 -3.0 614,640 + -1.5 614,774 - -0.4 614,777 + -1.8 614,777 + -1.9 614,778 - +0.4 614,814 + -2.7 614,815 - +1.4 614,815 - +1.5 614,815 - +0.9 614,857 + -0.4 614,876 - +0.9 614,904 + -0.7 614,904 + -1.0 614,905 - +0.8 614,937 + -1.4 614,937 + -1.0 614,937 + -1.0 615,062 + -2.6 615,142 - +1.0 615,142 - +1.5 615,142 - +0.4 615,142 - -0.1 615,142 - +1.3 615,142 - +0.6 615,178 + +1.2 615,178 + -1.6 615,179 - -0.1 615,179 - +1.3 615,180 + +0.2 615,180 + +0.1 615,180 + -2.7 615,180 + +0.1 615,180 + -1.6 615,180 + +0.2 615,180 + -1.5 615,180 + -1.4 615,181 - +1.3 615,181 - +0.2 615,181 - +0.8 615,267 - +0.2 615,371 + Psyr_0544 0.10 +0.4 615,371 + Psyr_0544 0.10 -1.5 615,372 - Psyr_0544 0.11 -0.1 615,372 - Psyr_0544 0.11 +3.1 615,372 - Psyr_0544 0.11 +0.4 615,606 - Psyr_0544 0.23 -0.4 615,641 + Psyr_0544 0.25 -0.4 615,641 + Psyr_0544 0.25 +1.0 615,641 + Psyr_0544 0.25 +2.4 615,642 - Psyr_0544 0.25 +1.5 615,642 - Psyr_0544 0.25 -0.0 615,733 + Psyr_0544 0.30 -0.3 616,043 + Psyr_0544 0.46 +0.8 616,043 + Psyr_0544 0.46 -1.3 616,043 + Psyr_0544 0.46 -0.2 616,044 - Psyr_0544 0.46 +0.3 616,044 - Psyr_0544 0.46 +0.8 616,139 + Psyr_0544 0.51 +0.7 616,139 + Psyr_0544 0.51 -0.0 616,139 + Psyr_0544 0.51 -0.5 616,140 - Psyr_0544 0.51 -0.2 616,140 - Psyr_0544 0.51 +2.4 616,172 + Psyr_0544 0.53 +0.2 616,172 + Psyr_0544 0.53 -0.6 616,271 + Psyr_0544 0.58 -0.0 616,271 + Psyr_0544 0.58 +2.8 616,272 - Psyr_0544 0.58 -0.5 616,532 + Psyr_0544 0.72 -1.2 616,532 + Psyr_0544 0.72 +1.0 616,533 - Psyr_0544 0.72 -0.8 616,637 + Psyr_0544 0.77 -0.7 616,637 + Psyr_0544 0.77 +0.8 616,637 + Psyr_0544 0.77 +0.2 616,638 - Psyr_0544 0.78 -1.3 616,703 + Psyr_0544 0.81 -0.8 616,703 + Psyr_0544 0.81 +0.1 616,703 + Psyr_0544 0.81 +0.3 616,703 + Psyr_0544 0.81 -1.4 616,704 - Psyr_0544 0.81 -0.9 616,704 - Psyr_0544 0.81 -0.7 616,704 - Psyr_0544 0.81 -1.5 616,704 - Psyr_0544 0.81 -1.6 616,980 + -1.0 617,048 + +0.3 617,048 + +0.6 617,048 + -0.3 617,060 + -0.9 617,060 + -0.6 617,060 + +1.5 617,061 - -0.6 617,081 + +0.2 617,083 + +0.1 617,083 + -0.0 617,083 + -0.8 617,083 + -0.1 617,083 + -0.5 617,083 + -1.3 617,083 + -1.3 617,084 - -1.7 617,084 - +2.4 617,084 - -0.9 617,117 + +0.9 617,118 - -0.3 617,172 + -0.0 617,173 - -0.9 617,189 + -0.2 617,189 + -1.4 617,190 - -0.2 617,190 - +0.8 617,401 + +0.1 617,499 + +0.8 617,500 - +0.5 617,500 - -0.7 617,500 - -1.5 617,512 + -1.6 617,512 + +0.6 617,513 - -0.0 617,513 - -0.3
Or see this region's nucleotide sequence