Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_847

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_845 and PfGW456L13_846 are separated by 12 nucleotidesPfGW456L13_846 and PfGW456L13_847 overlap by 18 nucleotidesPfGW456L13_847 and PfGW456L13_848 overlap by 1 nucleotidesPfGW456L13_848 and PfGW456L13_849 are separated by 490 nucleotides PfGW456L13_845 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 952,260 to 953,507 _845 PfGW456L13_846 - Lipoprotein LppL-related protein, at 953,520 to 953,645 _846 PfGW456L13_847 - hypothetical protein, at 953,628 to 953,906 _847 PfGW456L13_848 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 953,906 to 954,238 _848 PfGW456L13_849 - Regulator of nucleoside diphosphate kinase, at 954,729 to 955,139 _849 Position (kb) 953 954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 952.637 kb on - strand, within PfGW456L13_845at 952.744 kb on + strand, within PfGW456L13_845at 952.744 kb on + strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.819 kb on + strand, within PfGW456L13_845at 952.819 kb on + strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 953.026 kb on + strand, within PfGW456L13_845at 953.339 kb on - strand, within PfGW456L13_845at 953.377 kb on + strand, within PfGW456L13_845at 953.378 kb on - strand, within PfGW456L13_845at 953.387 kb on - strandat 953.387 kb on - strandat 953.387 kb on - strandat 953.387 kb on - strandat 953.419 kb on + strandat 953.419 kb on + strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.429 kb on + strandat 953.492 kb on - strandat 953.495 kb on + strandat 953.496 kb on - strandat 953.496 kb on - strandat 953.496 kb on - strandat 953.518 kb on + strandat 953.518 kb on + strandat 953.518 kb on + strandat 953.519 kb on - strandat 953.519 kb on - strandat 953.519 kb on - strandat 953.522 kb on - strandat 953.522 kb on - strandat 953.522 kb on - strandat 953.527 kb on + strandat 953.527 kb on + strandat 953.528 kb on - strandat 953.528 kb on - strandat 953.528 kb on - strandat 953.720 kb on - strand, within PfGW456L13_847at 953.720 kb on - strand, within PfGW456L13_847at 953.720 kb on - strand, within PfGW456L13_847at 953.734 kb on - strand, within PfGW456L13_847at 953.735 kb on + strand, within PfGW456L13_847at 953.759 kb on - strand, within PfGW456L13_847at 953.830 kb on - strand, within PfGW456L13_847at 953.858 kb on + strand, within PfGW456L13_847at 953.859 kb on - strand, within PfGW456L13_847at 954.122 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.283 kb on - strandat 954.283 kb on - strandat 954.380 kb on + strandat 954.380 kb on + strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.413 kb on + strandat 954.413 kb on + strandat 954.414 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.574 kb on - strandat 954.574 kb on - strandat 954.608 kb on - strandat 954.608 kb on - strandat 954.610 kb on - strandat 954.627 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
remove
952,637 - PfGW456L13_845 0.30 -2.6
952,744 + PfGW456L13_845 0.39 -1.0
952,744 + PfGW456L13_845 0.39 -1.0
952,745 - PfGW456L13_845 0.39 -1.6
952,745 - PfGW456L13_845 0.39 -1.0
952,745 - PfGW456L13_845 0.39 +0.0
952,745 - PfGW456L13_845 0.39 +0.0
952,819 + PfGW456L13_845 0.45 +0.0
952,819 + PfGW456L13_845 0.45 +0.0
952,820 - PfGW456L13_845 0.45 +0.0
952,820 - PfGW456L13_845 0.45 +0.0
952,820 - PfGW456L13_845 0.45 +0.0
952,820 - PfGW456L13_845 0.45 +0.0
952,820 - PfGW456L13_845 0.45 -2.0
952,820 - PfGW456L13_845 0.45 -1.0
952,963 + PfGW456L13_845 0.56 +0.0
952,963 + PfGW456L13_845 0.56 +0.0
952,963 + PfGW456L13_845 0.56 +0.0
952,963 + PfGW456L13_845 0.56 +0.0
952,964 - PfGW456L13_845 0.56 +0.0
952,964 - PfGW456L13_845 0.56 +0.6
952,964 - PfGW456L13_845 0.56 -1.6
952,964 - PfGW456L13_845 0.56 +0.0
952,964 - PfGW456L13_845 0.56 -2.0
952,964 - PfGW456L13_845 0.56 -1.0
952,964 - PfGW456L13_845 0.56 +0.0
952,964 - PfGW456L13_845 0.56 -1.6
953,026 + PfGW456L13_845 0.61 -2.3
953,339 - PfGW456L13_845 0.86 -1.0
953,377 + PfGW456L13_845 0.90 -1.6
953,378 - PfGW456L13_845 0.90 -1.0
953,387 - +0.0
953,387 - +0.0
953,387 - -1.6
953,387 - -1.0
953,419 + -1.0
953,419 + +0.0
953,420 - +1.3
953,420 - +0.0
953,420 - -1.0
953,420 - -2.6
953,420 - +0.0
953,420 - -1.6
953,429 + +0.0
953,492 - -1.0
953,495 + +0.0
953,496 - -1.0
953,496 - -1.0
953,496 - -2.6
953,518 + -1.0
953,518 + +0.0
953,518 + +0.0
953,519 - +0.4
953,519 - -1.3
953,519 - +0.4
953,522 - -0.6
953,522 - -0.5
953,522 - -0.2
953,527 + +0.0
953,527 + -2.3
953,528 - +0.5
953,528 - +0.3
953,528 - -0.4
953,720 - PfGW456L13_847 0.33 -0.2
953,720 - PfGW456L13_847 0.33 -0.8
953,720 - PfGW456L13_847 0.33 -0.1
953,734 - PfGW456L13_847 0.38 +1.8
953,735 + PfGW456L13_847 0.38 -3.1
953,759 - PfGW456L13_847 0.47 +1.0
953,830 - PfGW456L13_847 0.72 -0.2
953,858 + PfGW456L13_847 0.82 +1.1
953,859 - PfGW456L13_847 0.83 -0.4
954,122 + PfGW456L13_848 0.65 +0.2
954,190 + PfGW456L13_848 0.85 -0.1
954,190 + PfGW456L13_848 0.85 -1.1
954,191 - PfGW456L13_848 0.86 -1.6
954,191 - PfGW456L13_848 0.86 -1.3
954,283 - +0.9
954,283 - +0.0
954,380 + -2.0
954,380 + +0.7
954,381 - +0.3
954,381 - +0.2
954,381 - -0.7
954,413 + +0.1
954,413 + +0.1
954,414 - -0.5
954,460 - +0.0
954,460 - +0.7
954,573 + +0.3
954,573 + -0.0
954,573 + -0.2
954,573 + -1.2
954,574 - -0.1
954,574 - +0.6
954,608 - +0.4
954,608 - +0.5
954,610 - +0.2
954,627 - +0.6

Or see this region's nucleotide sequence