Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_763

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_761 and PfGW456L13_762 are separated by 44 nucleotidesPfGW456L13_762 and PfGW456L13_763 are separated by 153 nucleotidesPfGW456L13_763 and PfGW456L13_764 are separated by 121 nucleotides PfGW456L13_761 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 867,227 to 868,549 _761 PfGW456L13_762 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 868,594 to 869,283 _762 PfGW456L13_763 - Orf21; putative lipoprotein, at 869,437 to 869,823 _763 PfGW456L13_764 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 869,945 to 870,835 _764 Position (kb) 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 868.465 kb on - strandat 868.583 kb on - strandat 868.583 kb on - strandat 868.605 kb on + strandat 868.640 kb on - strandat 868.652 kb on + strandat 868.652 kb on + strandat 868.652 kb on + strandat 868.702 kb on - strand, within PfGW456L13_762at 868.715 kb on + strand, within PfGW456L13_762at 868.715 kb on + strand, within PfGW456L13_762at 868.715 kb on + strand, within PfGW456L13_762at 868.715 kb on + strand, within PfGW456L13_762at 868.715 kb on + strand, within PfGW456L13_762at 868.716 kb on - strand, within PfGW456L13_762at 868.716 kb on - strand, within PfGW456L13_762at 868.716 kb on - strand, within PfGW456L13_762at 868.716 kb on - strand, within PfGW456L13_762at 868.716 kb on - strand, within PfGW456L13_762at 868.760 kb on + strand, within PfGW456L13_762at 868.761 kb on - strand, within PfGW456L13_762at 868.761 kb on - strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.976 kb on + strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 868.977 kb on - strand, within PfGW456L13_762at 869.202 kb on - strand, within PfGW456L13_762at 869.202 kb on - strand, within PfGW456L13_762at 869.290 kb on - strandat 869.290 kb on - strandat 869.290 kb on - strandat 869.305 kb on + strandat 869.306 kb on - strandat 869.306 kb on - strandat 869.306 kb on - strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.324 kb on + strandat 869.325 kb on - strandat 869.325 kb on - strandat 869.325 kb on - strandat 869.325 kb on - strandat 869.337 kb on + strandat 869.337 kb on + strandat 869.338 kb on - strandat 869.338 kb on - strandat 869.338 kb on - strandat 869.338 kb on - strandat 869.356 kb on + strandat 869.356 kb on + strandat 869.357 kb on - strandat 869.357 kb on - strandat 869.393 kb on - strandat 869.399 kb on + strandat 869.399 kb on + strandat 869.399 kb on + strandat 869.399 kb on + strandat 869.400 kb on - strandat 869.400 kb on - strandat 869.400 kb on - strandat 869.400 kb on - strandat 869.487 kb on + strand, within PfGW456L13_763at 869.487 kb on + strand, within PfGW456L13_763at 869.488 kb on - strand, within PfGW456L13_763at 869.488 kb on - strand, within PfGW456L13_763at 869.553 kb on + strand, within PfGW456L13_763at 869.553 kb on + strand, within PfGW456L13_763at 869.553 kb on + strand, within PfGW456L13_763at 869.553 kb on + strand, within PfGW456L13_763at 869.553 kb on + strand, within PfGW456L13_763at 869.554 kb on - strand, within PfGW456L13_763at 869.554 kb on - strand, within PfGW456L13_763at 869.569 kb on + strand, within PfGW456L13_763at 869.569 kb on + strand, within PfGW456L13_763at 869.569 kb on + strand, within PfGW456L13_763at 869.569 kb on + strand, within PfGW456L13_763at 869.569 kb on + strand, within PfGW456L13_763at 869.570 kb on - strand, within PfGW456L13_763at 869.570 kb on - strand, within PfGW456L13_763at 869.570 kb on - strand, within PfGW456L13_763at 869.570 kb on - strand, within PfGW456L13_763at 869.570 kb on - strand, within PfGW456L13_763at 869.603 kb on + strand, within PfGW456L13_763at 869.670 kb on + strand, within PfGW456L13_763at 869.670 kb on + strand, within PfGW456L13_763at 869.670 kb on + strand, within PfGW456L13_763at 869.671 kb on - strand, within PfGW456L13_763at 869.671 kb on - strand, within PfGW456L13_763at 869.671 kb on - strand, within PfGW456L13_763at 869.716 kb on + strand, within PfGW456L13_763at 869.717 kb on - strand, within PfGW456L13_763at 869.734 kb on + strand, within PfGW456L13_763at 869.734 kb on + strand, within PfGW456L13_763at 869.734 kb on + strand, within PfGW456L13_763at 869.735 kb on - strand, within PfGW456L13_763at 869.735 kb on - strand, within PfGW456L13_763at 869.735 kb on - strand, within PfGW456L13_763at 869.737 kb on + strand, within PfGW456L13_763at 869.737 kb on + strand, within PfGW456L13_763at 869.737 kb on + strand, within PfGW456L13_763at 869.737 kb on + strand, within PfGW456L13_763at 869.737 kb on + strand, within PfGW456L13_763at 869.737 kb on + strand, within PfGW456L13_763at 869.737 kb on + strand, within PfGW456L13_763at 869.738 kb on - strand, within PfGW456L13_763at 869.738 kb on - strand, within PfGW456L13_763at 869.738 kb on - strand, within PfGW456L13_763at 869.738 kb on - strand, within PfGW456L13_763at 869.738 kb on - strand, within PfGW456L13_763at 869.740 kb on + strand, within PfGW456L13_763at 869.740 kb on + strand, within PfGW456L13_763at 869.740 kb on + strand, within PfGW456L13_763at 869.740 kb on + strand, within PfGW456L13_763at 869.740 kb on + strand, within PfGW456L13_763at 869.740 kb on + strand, within PfGW456L13_763at 869.741 kb on - strand, within PfGW456L13_763at 869.741 kb on - strand, within PfGW456L13_763at 869.821 kb on + strandat 869.822 kb on - strandat 869.822 kb on - strandat 869.822 kb on - strandat 869.836 kb on - strandat 869.836 kb on - strandat 869.836 kb on - strandat 869.836 kb on - strandat 869.836 kb on - strandat 869.870 kb on + strandat 869.930 kb on - strandat 869.939 kb on - strandat 869.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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868,465 - -0.1
868,583 - -0.6
868,583 - +0.2
868,605 + -0.2
868,640 - -0.3
868,652 + +0.2
868,652 + -0.2
868,652 + -0.4
868,702 - PfGW456L13_762 0.16 +0.2
868,715 + PfGW456L13_762 0.18 +0.0
868,715 + PfGW456L13_762 0.18 +0.0
868,715 + PfGW456L13_762 0.18 +0.2
868,715 + PfGW456L13_762 0.18 -0.5
868,715 + PfGW456L13_762 0.18 -1.2
868,716 - PfGW456L13_762 0.18 +0.4
868,716 - PfGW456L13_762 0.18 +0.0
868,716 - PfGW456L13_762 0.18 -0.3
868,716 - PfGW456L13_762 0.18 -1.7
868,716 - PfGW456L13_762 0.18 +0.0
868,760 + PfGW456L13_762 0.24 +0.2
868,761 - PfGW456L13_762 0.24 -1.6
868,761 - PfGW456L13_762 0.24 +0.5
868,976 + PfGW456L13_762 0.55 +1.9
868,976 + PfGW456L13_762 0.55 -0.5
868,976 + PfGW456L13_762 0.55 -0.2
868,976 + PfGW456L13_762 0.55 -2.4
868,976 + PfGW456L13_762 0.55 -0.8
868,976 + PfGW456L13_762 0.55 -0.6
868,976 + PfGW456L13_762 0.55 +0.6
868,976 + PfGW456L13_762 0.55 -1.6
868,977 - PfGW456L13_762 0.56 -0.6
868,977 - PfGW456L13_762 0.56 +3.0
868,977 - PfGW456L13_762 0.56 -2.3
868,977 - PfGW456L13_762 0.56 +0.4
868,977 - PfGW456L13_762 0.56 +0.3
868,977 - PfGW456L13_762 0.56 +0.0
868,977 - PfGW456L13_762 0.56 -2.7
868,977 - PfGW456L13_762 0.56 -0.1
869,202 - PfGW456L13_762 0.88 +0.0
869,202 - PfGW456L13_762 0.88 +1.3
869,290 - +0.1
869,290 - -3.1
869,290 - +0.3
869,305 + -0.1
869,306 - +0.1
869,306 - -1.6
869,306 - +0.4
869,324 + +1.7
869,324 + -2.3
869,324 + +0.2
869,324 + +0.6
869,324 + -1.0
869,324 + +2.0
869,324 + -1.3
869,324 + -0.9
869,324 + +0.9
869,325 - +0.2
869,325 - +0.5
869,325 - +0.2
869,325 - +1.2
869,337 + +0.2
869,337 + -0.1
869,338 - -0.6
869,338 - -0.3
869,338 - +0.1
869,338 - -0.6
869,356 + +0.0
869,356 + -0.6
869,357 - +0.3
869,357 - -0.1
869,393 - +0.0
869,399 + +0.0
869,399 + +0.0
869,399 + -2.6
869,399 + +0.0
869,400 - +0.0
869,400 - +2.6
869,400 - -0.7
869,400 - +1.8
869,487 + PfGW456L13_763 0.13 +0.7
869,487 + PfGW456L13_763 0.13 -0.4
869,488 - PfGW456L13_763 0.13 +0.8
869,488 - PfGW456L13_763 0.13 +0.0
869,553 + PfGW456L13_763 0.30 +0.3
869,553 + PfGW456L13_763 0.30 +0.4
869,553 + PfGW456L13_763 0.30 -0.1
869,553 + PfGW456L13_763 0.30 -0.1
869,553 + PfGW456L13_763 0.30 +0.5
869,554 - PfGW456L13_763 0.30 -1.8
869,554 - PfGW456L13_763 0.30 +0.7
869,569 + PfGW456L13_763 0.34 +0.0
869,569 + PfGW456L13_763 0.34 +0.0
869,569 + PfGW456L13_763 0.34 -0.5
869,569 + PfGW456L13_763 0.34 +0.5
869,569 + PfGW456L13_763 0.34 +2.0
869,570 - PfGW456L13_763 0.34 -0.9
869,570 - PfGW456L13_763 0.34 -0.8
869,570 - PfGW456L13_763 0.34 -0.5
869,570 - PfGW456L13_763 0.34 +0.0
869,570 - PfGW456L13_763 0.34 +0.2
869,603 + PfGW456L13_763 0.43 +0.4
869,670 + PfGW456L13_763 0.60 +0.4
869,670 + PfGW456L13_763 0.60 -0.7
869,670 + PfGW456L13_763 0.60 -0.3
869,671 - PfGW456L13_763 0.60 +0.3
869,671 - PfGW456L13_763 0.60 +0.9
869,671 - PfGW456L13_763 0.60 +0.9
869,716 + PfGW456L13_763 0.72 -0.8
869,717 - PfGW456L13_763 0.72 +1.0
869,734 + PfGW456L13_763 0.77 +0.7
869,734 + PfGW456L13_763 0.77 -0.1
869,734 + PfGW456L13_763 0.77 -0.2
869,735 - PfGW456L13_763 0.77 +0.0
869,735 - PfGW456L13_763 0.77 -0.6
869,735 - PfGW456L13_763 0.77 +0.4
869,737 + PfGW456L13_763 0.78 +0.5
869,737 + PfGW456L13_763 0.78 -0.5
869,737 + PfGW456L13_763 0.78 +0.3
869,737 + PfGW456L13_763 0.78 -1.3
869,737 + PfGW456L13_763 0.78 -1.0
869,737 + PfGW456L13_763 0.78 +1.2
869,737 + PfGW456L13_763 0.78 +0.7
869,738 - PfGW456L13_763 0.78 -0.1
869,738 - PfGW456L13_763 0.78 +0.6
869,738 - PfGW456L13_763 0.78 -0.1
869,738 - PfGW456L13_763 0.78 +0.1
869,738 - PfGW456L13_763 0.78 +0.9
869,740 + PfGW456L13_763 0.78 +0.2
869,740 + PfGW456L13_763 0.78 +0.5
869,740 + PfGW456L13_763 0.78 +0.0
869,740 + PfGW456L13_763 0.78 +0.4
869,740 + PfGW456L13_763 0.78 -1.2
869,740 + PfGW456L13_763 0.78 +0.4
869,741 - PfGW456L13_763 0.79 -0.6
869,741 - PfGW456L13_763 0.79 +1.2
869,821 + +0.5
869,822 - -1.6
869,822 - +0.3
869,822 - -1.0
869,836 - -0.6
869,836 - +0.7
869,836 - -1.4
869,836 - +3.0
869,836 - -0.5
869,870 + +0.9
869,930 - +0.6
869,939 - +1.4
869,959 - -1.0

Or see this region's nucleotide sequence