Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5120 and PfGW456L13_5121 are separated by 587 nucleotides PfGW456L13_5121 and PfGW456L13_5122 are separated by 512 nucleotides
PfGW456L13_5120 - hypothetical protein, at 5,712,736 to 5,713,014
_5120
PfGW456L13_5121 - hypothetical protein, at 5,713,602 to 5,713,865
_5121
PfGW456L13_5122 - PAP2 superfamily protein, at 5,714,378 to 5,715,205
_5122
Position (kb) 5713
5714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5712.634 kb on - strand at 5712.634 kb on - strand at 5712.646 kb on - strand at 5712.692 kb on + strand at 5712.693 kb on - strand at 5712.693 kb on - strand at 5712.698 kb on + strand at 5712.699 kb on - strand at 5712.699 kb on - strand at 5712.699 kb on - strand at 5712.731 kb on + strand at 5712.731 kb on + strand at 5712.794 kb on + strand, within PfGW456L13_5120 at 5712.794 kb on + strand, within PfGW456L13_5120 at 5712.795 kb on - strand, within PfGW456L13_5120 at 5712.795 kb on - strand, within PfGW456L13_5120 at 5712.795 kb on - strand, within PfGW456L13_5120 at 5712.819 kb on + strand, within PfGW456L13_5120 at 5712.820 kb on - strand, within PfGW456L13_5120 at 5712.820 kb on - strand, within PfGW456L13_5120 at 5712.820 kb on - strand, within PfGW456L13_5120 at 5713.061 kb on + strand at 5713.061 kb on + strand at 5713.061 kb on + strand at 5713.061 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.068 kb on + strand at 5713.070 kb on + strand at 5713.070 kb on + strand at 5713.198 kb on + strand at 5713.198 kb on + strand at 5713.198 kb on + strand at 5713.200 kb on + strand at 5713.429 kb on + strand at 5713.430 kb on - strand at 5713.606 kb on + strand at 5713.606 kb on + strand at 5713.607 kb on - strand at 5713.607 kb on - strand at 5713.607 kb on - strand at 5713.787 kb on - strand, within PfGW456L13_5121 at 5713.849 kb on + strand at 5713.849 kb on + strand at 5713.849 kb on + strand at 5713.850 kb on - strand at 5713.850 kb on - strand at 5713.850 kb on - strand at 5713.924 kb on + strand at 5713.924 kb on + strand at 5713.936 kb on + strand at 5713.936 kb on + strand at 5713.936 kb on + strand at 5713.936 kb on + strand at 5713.937 kb on - strand at 5713.943 kb on + strand at 5713.944 kb on - strand at 5713.991 kb on + strand at 5714.022 kb on + strand at 5714.022 kb on + strand at 5714.023 kb on - strand at 5714.023 kb on - strand at 5714.023 kb on - strand at 5714.023 kb on - strand at 5714.073 kb on + strand at 5714.073 kb on + strand at 5714.142 kb on + strand at 5714.143 kb on - strand at 5714.146 kb on + strand at 5714.146 kb on + strand at 5714.146 kb on + strand at 5714.146 kb on + strand at 5714.146 kb on + strand at 5714.147 kb on - strand at 5714.147 kb on - strand at 5714.147 kb on - strand at 5714.147 kb on - strand at 5714.164 kb on - strand at 5714.219 kb on + strand at 5714.219 kb on + strand at 5714.219 kb on + strand at 5714.220 kb on - strand at 5714.220 kb on - strand at 5714.220 kb on - strand at 5714.220 kb on - strand at 5714.220 kb on - strand at 5714.220 kb on - strand at 5714.529 kb on + strand, within PfGW456L13_5122 at 5714.529 kb on + strand, within PfGW456L13_5122 at 5714.529 kb on + strand, within PfGW456L13_5122 at 5714.530 kb on - strand, within PfGW456L13_5122 at 5714.530 kb on - strand, within PfGW456L13_5122 at 5714.530 kb on - strand, within PfGW456L13_5122 at 5714.530 kb on - strand, within PfGW456L13_5122 at 5714.530 kb on - strand, within PfGW456L13_5122 at 5714.530 kb on - strand, within PfGW456L13_5122 at 5714.547 kb on - strand, within PfGW456L13_5122 at 5714.562 kb on + strand, within PfGW456L13_5122 at 5714.562 kb on + strand, within PfGW456L13_5122 at 5714.562 kb on + strand, within PfGW456L13_5122 at 5714.563 kb on - strand, within PfGW456L13_5122 at 5714.563 kb on - strand, within PfGW456L13_5122 at 5714.563 kb on - strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.589 kb on + strand, within PfGW456L13_5122 at 5714.590 kb on - strand, within PfGW456L13_5122 at 5714.590 kb on - strand, within PfGW456L13_5122 at 5714.590 kb on - strand, within PfGW456L13_5122 at 5714.590 kb on - strand, within PfGW456L13_5122 at 5714.590 kb on - strand, within PfGW456L13_5122 at 5714.590 kb on - strand, within PfGW456L13_5122 at 5714.638 kb on - strand, within PfGW456L13_5122 at 5714.638 kb on - strand, within PfGW456L13_5122 at 5714.638 kb on - strand, within PfGW456L13_5122 at 5714.727 kb on + strand, within PfGW456L13_5122 at 5714.758 kb on - strand, within PfGW456L13_5122 at 5714.782 kb on - strand, within PfGW456L13_5122 at 5714.782 kb on - strand, within PfGW456L13_5122 at 5714.782 kb on - strand, within PfGW456L13_5122 at 5714.782 kb on - strand, within PfGW456L13_5122 at 5714.806 kb on - strand, within PfGW456L13_5122 at 5714.847 kb on + strand, within PfGW456L13_5122 at 5714.847 kb on + strand, within PfGW456L13_5122 at 5714.847 kb on + strand, within PfGW456L13_5122 at 5714.848 kb on - strand, within PfGW456L13_5122 at 5714.848 kb on - strand, within PfGW456L13_5122
Per-strain Table
Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x remove 5,712,634 - +0.2 5,712,634 - +1.0 5,712,646 - -0.5 5,712,692 + -0.5 5,712,693 - -0.4 5,712,693 - -0.5 5,712,698 + -0.3 5,712,699 - -0.0 5,712,699 - -0.4 5,712,699 - -0.5 5,712,731 + +0.6 5,712,731 + +0.6 5,712,794 + PfGW456L13_5120 0.21 -0.2 5,712,794 + PfGW456L13_5120 0.21 +0.9 5,712,795 - PfGW456L13_5120 0.21 -0.0 5,712,795 - PfGW456L13_5120 0.21 -1.3 5,712,795 - PfGW456L13_5120 0.21 +0.4 5,712,819 + PfGW456L13_5120 0.30 -0.5 5,712,820 - PfGW456L13_5120 0.30 +0.4 5,712,820 - PfGW456L13_5120 0.30 +1.6 5,712,820 - PfGW456L13_5120 0.30 -0.0 5,713,061 + -0.1 5,713,061 + -0.3 5,713,061 + -2.0 5,713,061 + -1.0 5,713,068 + +0.4 5,713,068 + -0.5 5,713,068 + -2.1 5,713,068 + +0.3 5,713,068 + -1.9 5,713,068 + +0.6 5,713,068 + -0.0 5,713,068 + -0.0 5,713,068 + -0.8 5,713,068 + -0.5 5,713,068 + -0.4 5,713,068 + +0.1 5,713,068 + +0.4 5,713,070 + -1.2 5,713,070 + -1.1 5,713,198 + -0.0 5,713,198 + +0.3 5,713,198 + -0.0 5,713,200 + -1.0 5,713,429 + -0.0 5,713,430 - -0.0 5,713,606 + -0.8 5,713,606 + -2.6 5,713,607 - -1.4 5,713,607 - +0.1 5,713,607 - -1.8 5,713,787 - PfGW456L13_5121 0.70 -1.6 5,713,849 + -2.1 5,713,849 + +0.2 5,713,849 + -1.0 5,713,850 - -1.3 5,713,850 - +0.4 5,713,850 - +1.0 5,713,924 + -0.0 5,713,924 + -1.0 5,713,936 + -0.2 5,713,936 + +0.5 5,713,936 + -1.4 5,713,936 + -0.1 5,713,937 - -1.6 5,713,943 + -0.1 5,713,944 - -0.0 5,713,991 + -0.5 5,714,022 + -0.5 5,714,022 + -1.6 5,714,023 - -1.8 5,714,023 - -1.8 5,714,023 - -0.6 5,714,023 - -0.0 5,714,073 + -0.2 5,714,073 + -0.7 5,714,142 + -0.7 5,714,143 - -0.6 5,714,146 + +0.1 5,714,146 + -1.2 5,714,146 + -0.9 5,714,146 + -0.0 5,714,146 + +0.8 5,714,147 - -1.6 5,714,147 - -0.2 5,714,147 - -0.0 5,714,147 - +0.5 5,714,164 - -1.3 5,714,219 + -0.6 5,714,219 + -0.4 5,714,219 + -0.7 5,714,220 - -2.6 5,714,220 - -1.6 5,714,220 - -0.9 5,714,220 - +1.0 5,714,220 - -1.5 5,714,220 - +0.9 5,714,529 + PfGW456L13_5122 0.18 -0.5 5,714,529 + PfGW456L13_5122 0.18 -0.0 5,714,529 + PfGW456L13_5122 0.18 -0.2 5,714,530 - PfGW456L13_5122 0.18 +0.2 5,714,530 - PfGW456L13_5122 0.18 +1.0 5,714,530 - PfGW456L13_5122 0.18 +0.3 5,714,530 - PfGW456L13_5122 0.18 -1.4 5,714,530 - PfGW456L13_5122 0.18 +1.8 5,714,530 - PfGW456L13_5122 0.18 +1.6 5,714,547 - PfGW456L13_5122 0.20 -3.2 5,714,562 + PfGW456L13_5122 0.22 -0.4 5,714,562 + PfGW456L13_5122 0.22 +1.0 5,714,562 + PfGW456L13_5122 0.22 -0.2 5,714,563 - PfGW456L13_5122 0.22 -0.5 5,714,563 - PfGW456L13_5122 0.22 +0.3 5,714,563 - PfGW456L13_5122 0.22 +0.7 5,714,589 + PfGW456L13_5122 0.25 -0.2 5,714,589 + PfGW456L13_5122 0.25 +1.3 5,714,589 + PfGW456L13_5122 0.25 +0.5 5,714,589 + PfGW456L13_5122 0.25 -1.0 5,714,589 + PfGW456L13_5122 0.25 -2.9 5,714,589 + PfGW456L13_5122 0.25 +0.4 5,714,589 + PfGW456L13_5122 0.25 +1.2 5,714,589 + PfGW456L13_5122 0.25 +0.2 5,714,589 + PfGW456L13_5122 0.25 -3.0 5,714,589 + PfGW456L13_5122 0.25 -1.6 5,714,590 - PfGW456L13_5122 0.26 +0.4 5,714,590 - PfGW456L13_5122 0.26 +0.1 5,714,590 - PfGW456L13_5122 0.26 -0.6 5,714,590 - PfGW456L13_5122 0.26 -0.6 5,714,590 - PfGW456L13_5122 0.26 -0.0 5,714,590 - PfGW456L13_5122 0.26 +0.1 5,714,638 - PfGW456L13_5122 0.31 -0.3 5,714,638 - PfGW456L13_5122 0.31 +0.1 5,714,638 - PfGW456L13_5122 0.31 +0.5 5,714,727 + PfGW456L13_5122 0.42 -0.0 5,714,758 - PfGW456L13_5122 0.46 -0.7 5,714,782 - PfGW456L13_5122 0.49 -1.4 5,714,782 - PfGW456L13_5122 0.49 +3.4 5,714,782 - PfGW456L13_5122 0.49 -0.0 5,714,782 - PfGW456L13_5122 0.49 -0.6 5,714,806 - PfGW456L13_5122 0.52 -0.1 5,714,847 + PfGW456L13_5122 0.57 -0.8 5,714,847 + PfGW456L13_5122 0.57 -0.0 5,714,847 + PfGW456L13_5122 0.57 -2.6 5,714,848 - PfGW456L13_5122 0.57 +1.9 5,714,848 - PfGW456L13_5122 0.57 +0.9
Or see this region's nucleotide sequence