Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4196

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4195 and PfGW456L13_4196 are separated by 36 nucleotidesPfGW456L13_4196 and PfGW456L13_4197 are separated by 126 nucleotides PfGW456L13_4195 - Aspartyl aminopeptidase, at 4,705,792 to 4,707,081 _4195 PfGW456L13_4196 - FIG00953060: hypothetical protein, at 4,707,118 to 4,707,432 _4196 PfGW456L13_4197 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 4,707,559 to 4,709,661 _4197 Position (kb) 4707 4708Strain fitness (log2 ratio) -2 -1 0 1 2at 4706.434 kb on + strand, within PfGW456L13_4195at 4706.435 kb on - strand, within PfGW456L13_4195at 4706.515 kb on + strand, within PfGW456L13_4195at 4706.516 kb on - strand, within PfGW456L13_4195at 4706.516 kb on - strand, within PfGW456L13_4195at 4706.675 kb on + strand, within PfGW456L13_4195at 4706.737 kb on + strand, within PfGW456L13_4195at 4706.737 kb on + strand, within PfGW456L13_4195at 4706.737 kb on + strand, within PfGW456L13_4195at 4706.738 kb on - strand, within PfGW456L13_4195at 4706.738 kb on - strand, within PfGW456L13_4195at 4706.738 kb on - strand, within PfGW456L13_4195at 4706.891 kb on + strand, within PfGW456L13_4195at 4707.058 kb on + strandat 4707.058 kb on + strandat 4707.058 kb on + strandat 4707.058 kb on + strandat 4707.059 kb on - strandat 4707.059 kb on - strandat 4707.059 kb on - strandat 4707.091 kb on + strandat 4707.092 kb on - strandat 4707.092 kb on - strandat 4707.098 kb on + strandat 4707.099 kb on - strandat 4707.133 kb on + strandat 4707.193 kb on - strand, within PfGW456L13_4196at 4707.193 kb on - strand, within PfGW456L13_4196at 4707.232 kb on + strand, within PfGW456L13_4196at 4707.233 kb on - strand, within PfGW456L13_4196at 4707.270 kb on + strand, within PfGW456L13_4196at 4707.271 kb on - strand, within PfGW456L13_4196at 4707.271 kb on - strand, within PfGW456L13_4196at 4707.430 kb on + strandat 4707.431 kb on - strandat 4707.471 kb on + strandat 4707.471 kb on + strandat 4707.471 kb on + strandat 4707.471 kb on + strandat 4707.471 kb on + strandat 4707.472 kb on - strandat 4707.509 kb on + strandat 4707.510 kb on - strandat 4707.540 kb on + strandat 4707.541 kb on - strandat 4707.541 kb on - strandat 4707.780 kb on - strand, within PfGW456L13_4197at 4707.780 kb on - strand, within PfGW456L13_4197at 4708.117 kb on + strand, within PfGW456L13_4197at 4708.117 kb on + strand, within PfGW456L13_4197at 4708.117 kb on + strand, within PfGW456L13_4197at 4708.118 kb on - strand, within PfGW456L13_4197at 4708.118 kb on - strand, within PfGW456L13_4197at 4708.126 kb on + strand, within PfGW456L13_4197at 4708.126 kb on + strand, within PfGW456L13_4197at 4708.126 kb on + strand, within PfGW456L13_4197at 4708.127 kb on - strand, within PfGW456L13_4197at 4708.127 kb on - strand, within PfGW456L13_4197at 4708.127 kb on - strand, within PfGW456L13_4197at 4708.127 kb on - strand, within PfGW456L13_4197at 4708.175 kb on - strand, within PfGW456L13_4197at 4708.175 kb on - strand, within PfGW456L13_4197at 4708.175 kb on - strand, within PfGW456L13_4197at 4708.261 kb on + strand, within PfGW456L13_4197at 4708.261 kb on + strand, within PfGW456L13_4197at 4708.261 kb on + strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strandat 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197at 4708.262 kb on - strand, within PfGW456L13_4197

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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4,706,434 + PfGW456L13_4195 0.50 -0.6
4,706,435 - PfGW456L13_4195 0.50 -0.4
4,706,515 + PfGW456L13_4195 0.56 +0.5
4,706,516 - PfGW456L13_4195 0.56 +0.4
4,706,516 - PfGW456L13_4195 0.56 -0.4
4,706,675 + PfGW456L13_4195 0.68 +0.1
4,706,737 + PfGW456L13_4195 0.73 -0.6
4,706,737 + PfGW456L13_4195 0.73 +0.8
4,706,737 + PfGW456L13_4195 0.73 -1.3
4,706,738 - PfGW456L13_4195 0.73 -1.5
4,706,738 - PfGW456L13_4195 0.73 +0.6
4,706,738 - PfGW456L13_4195 0.73 +0.9
4,706,891 + PfGW456L13_4195 0.85 +0.9
4,707,058 + +0.6
4,707,058 + +0.9
4,707,058 + -0.4
4,707,058 + +0.2
4,707,059 - +0.9
4,707,059 - -2.1
4,707,059 - +1.8
4,707,091 + +0.0
4,707,092 - -1.2
4,707,092 - +0.5
4,707,098 + -0.5
4,707,099 - +1.4
4,707,133 + -0.4
4,707,193 - PfGW456L13_4196 0.24 -0.5
4,707,193 - PfGW456L13_4196 0.24 +0.4
4,707,232 + PfGW456L13_4196 0.36 -0.6
4,707,233 - PfGW456L13_4196 0.37 -2.0
4,707,270 + PfGW456L13_4196 0.48 +0.2
4,707,271 - PfGW456L13_4196 0.49 +1.1
4,707,271 - PfGW456L13_4196 0.49 -0.9
4,707,430 + -2.2
4,707,431 - -0.4
4,707,471 + -0.1
4,707,471 + -1.1
4,707,471 + +1.1
4,707,471 + +0.6
4,707,471 + +0.1
4,707,472 - -0.6
4,707,509 + -1.6
4,707,510 - +0.1
4,707,540 + -1.8
4,707,541 - -0.2
4,707,541 - -0.1
4,707,780 - PfGW456L13_4197 0.11 +0.9
4,707,780 - PfGW456L13_4197 0.11 +0.1
4,708,117 + PfGW456L13_4197 0.27 -1.1
4,708,117 + PfGW456L13_4197 0.27 +0.9
4,708,117 + PfGW456L13_4197 0.27 +0.8
4,708,118 - PfGW456L13_4197 0.27 +0.3
4,708,118 - PfGW456L13_4197 0.27 +0.2
4,708,126 + PfGW456L13_4197 0.27 -0.5
4,708,126 + PfGW456L13_4197 0.27 -0.5
4,708,126 + PfGW456L13_4197 0.27 +0.8
4,708,127 - PfGW456L13_4197 0.27 -0.1
4,708,127 - PfGW456L13_4197 0.27 +1.8
4,708,127 - PfGW456L13_4197 0.27 +1.5
4,708,127 - PfGW456L13_4197 0.27 +0.4
4,708,175 - PfGW456L13_4197 0.29 +0.2
4,708,175 - PfGW456L13_4197 0.29 +0.3
4,708,175 - PfGW456L13_4197 0.29 -0.1
4,708,261 + PfGW456L13_4197 0.33 -0.4
4,708,261 + PfGW456L13_4197 0.33 +0.5
4,708,261 + PfGW456L13_4197 0.33 +0.7
4,708,262 - PfGW456L13_4197 0.33 -1.4
4,708,262 - +2.3
4,708,262 - PfGW456L13_4197 0.33 +1.1
4,708,262 - PfGW456L13_4197 0.33 -1.0
4,708,262 - PfGW456L13_4197 0.33 +0.4
4,708,262 - PfGW456L13_4197 0.33 +0.1
4,708,262 - PfGW456L13_4197 0.33 +0.2
4,708,262 - PfGW456L13_4197 0.33 +0.1
4,708,262 - PfGW456L13_4197 0.33 -0.9
4,708,262 - PfGW456L13_4197 0.33 -0.9
4,708,262 - PfGW456L13_4197 0.33 +0.5
4,708,262 - PfGW456L13_4197 0.33 +0.4
4,708,262 - PfGW456L13_4197 0.33 -1.1
4,708,262 - PfGW456L13_4197 0.33 -1.4
4,708,262 - PfGW456L13_4197 0.33 +1.3
4,708,262 - PfGW456L13_4197 0.33 +0.2

Or see this region's nucleotide sequence