Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1410

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1409 and PfGW456L13_1410 are separated by 117 nucleotidesPfGW456L13_1410 and PfGW456L13_1411 are separated by 292 nucleotides PfGW456L13_1409 - ATP-dependent RNA helicase PA3950, at 1,556,781 to 1,558,121 _1409 PfGW456L13_1410 - NAD(FAD)-utilizing dehydrogenases, at 1,558,239 to 1,559,480 _1410 PfGW456L13_1411 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 1,559,773 to 1,560,693 _1411 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1557.297 kb on + strand, within PfGW456L13_1409at 1557.297 kb on + strand, within PfGW456L13_1409at 1557.298 kb on - strand, within PfGW456L13_1409at 1557.431 kb on + strand, within PfGW456L13_1409at 1557.432 kb on - strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.113 kb on - strandat 1558.113 kb on - strandat 1558.113 kb on - strandat 1558.139 kb on + strandat 1558.315 kb on + strandat 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.727 kb on - strand, within PfGW456L13_1410at 1558.880 kb on + strand, within PfGW456L13_1410at 1558.905 kb on + strand, within PfGW456L13_1410at 1558.905 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.086 kb on - strand, within PfGW456L13_1410at 1559.086 kb on - strand, within PfGW456L13_1410at 1559.270 kb on - strand, within PfGW456L13_1410at 1559.270 kb on - strand, within PfGW456L13_1410at 1559.270 kb on - strand, within PfGW456L13_1410at 1559.361 kb on - strandat 1559.361 kb on - strandat 1559.369 kb on - strandat 1559.520 kb on + strandat 1559.520 kb on + strandat 1559.521 kb on - strandat 1559.538 kb on + strandat 1559.539 kb on - strandat 1559.632 kb on + strandat 1559.633 kb on - strandat 1559.633 kb on - strandat 1559.633 kb on - strandat 1559.685 kb on + strandat 1559.708 kb on + strandat 1559.709 kb on - strandat 1559.982 kb on + strand, within PfGW456L13_1411at 1559.983 kb on - strand, within PfGW456L13_1411at 1560.005 kb on + strand, within PfGW456L13_1411at 1560.005 kb on + strand, within PfGW456L13_1411at 1560.006 kb on - strand, within PfGW456L13_1411at 1560.006 kb on - strand, within PfGW456L13_1411at 1560.006 kb on - strand, within PfGW456L13_1411at 1560.026 kb on + strand, within PfGW456L13_1411at 1560.041 kb on + strand, within PfGW456L13_1411at 1560.041 kb on + strand, within PfGW456L13_1411at 1560.071 kb on + strand, within PfGW456L13_1411at 1560.071 kb on + strand, within PfGW456L13_1411at 1560.071 kb on + strand, within PfGW456L13_1411at 1560.183 kb on + strand, within PfGW456L13_1411at 1560.184 kb on - strand, within PfGW456L13_1411at 1560.190 kb on + strand, within PfGW456L13_1411at 1560.190 kb on + strand, within PfGW456L13_1411at 1560.190 kb on + strand, within PfGW456L13_1411at 1560.190 kb on + strand, within PfGW456L13_1411at 1560.190 kb on + strand, within PfGW456L13_1411at 1560.191 kb on - strand, within PfGW456L13_1411at 1560.191 kb on - strand, within PfGW456L13_1411at 1560.191 kb on - strand, within PfGW456L13_1411at 1560.191 kb on - strand, within PfGW456L13_1411at 1560.191 kb on - strand, within PfGW456L13_1411at 1560.269 kb on + strand, within PfGW456L13_1411at 1560.270 kb on - strand, within PfGW456L13_1411at 1560.270 kb on - strand, within PfGW456L13_1411at 1560.323 kb on + strand, within PfGW456L13_1411at 1560.323 kb on + strand, within PfGW456L13_1411at 1560.324 kb on - strand, within PfGW456L13_1411at 1560.324 kb on - strand, within PfGW456L13_1411at 1560.324 kb on - strand, within PfGW456L13_1411at 1560.479 kb on - strand, within PfGW456L13_1411

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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1,557,297 + PfGW456L13_1409 0.38 -1.1
1,557,297 + PfGW456L13_1409 0.38 +1.6
1,557,298 - PfGW456L13_1409 0.39 -1.0
1,557,431 + PfGW456L13_1409 0.48 +0.0
1,557,432 - PfGW456L13_1409 0.49 -1.2
1,557,762 + PfGW456L13_1409 0.73 -1.6
1,557,762 + PfGW456L13_1409 0.73 -2.1
1,557,762 + PfGW456L13_1409 0.73 -2.4
1,557,762 + PfGW456L13_1409 0.73 +3.0
1,557,762 + PfGW456L13_1409 0.73 -1.3
1,557,762 + PfGW456L13_1409 0.73 +0.0
1,557,762 + PfGW456L13_1409 0.73 +0.6
1,557,762 + PfGW456L13_1409 0.73 -1.0
1,557,762 + PfGW456L13_1409 0.73 -1.2
1,557,762 + PfGW456L13_1409 0.73 +0.0
1,557,762 + PfGW456L13_1409 0.73 -0.4
1,557,762 + PfGW456L13_1409 0.73 +0.0
1,557,763 - PfGW456L13_1409 0.73 +1.0
1,557,763 - PfGW456L13_1409 0.73 -0.2
1,557,763 - PfGW456L13_1409 0.73 +1.0
1,557,763 - PfGW456L13_1409 0.73 -2.6
1,557,763 - PfGW456L13_1409 0.73 -0.3
1,558,112 + -2.0
1,558,112 + -1.6
1,558,112 + -1.2
1,558,112 + -0.6
1,558,112 + -2.8
1,558,112 + -1.0
1,558,113 - -1.0
1,558,113 - +0.0
1,558,113 - -0.2
1,558,139 + -0.2
1,558,315 + -0.7
1,558,726 + PfGW456L13_1410 0.39 +1.4
1,558,726 + PfGW456L13_1410 0.39 +0.9
1,558,726 + PfGW456L13_1410 0.39 -0.1
1,558,726 + PfGW456L13_1410 0.39 +0.1
1,558,726 + PfGW456L13_1410 0.39 +0.7
1,558,727 - PfGW456L13_1410 0.39 -0.1
1,558,880 + PfGW456L13_1410 0.52 +0.7
1,558,905 + PfGW456L13_1410 0.54 -0.4
1,558,905 + PfGW456L13_1410 0.54 -0.6
1,559,085 + PfGW456L13_1410 0.68 +0.0
1,559,085 + PfGW456L13_1410 0.68 +0.6
1,559,085 + PfGW456L13_1410 0.68 +0.0
1,559,085 + PfGW456L13_1410 0.68 +0.5
1,559,085 + PfGW456L13_1410 0.68 +1.3
1,559,085 + PfGW456L13_1410 0.68 +1.3
1,559,086 - PfGW456L13_1410 0.68 +0.0
1,559,086 - PfGW456L13_1410 0.68 +0.4
1,559,270 - PfGW456L13_1410 0.83 -1.0
1,559,270 - PfGW456L13_1410 0.83 +1.0
1,559,270 - PfGW456L13_1410 0.83 -2.0
1,559,361 - -1.5
1,559,361 - +0.1
1,559,369 - +0.8
1,559,520 + +0.3
1,559,520 + +0.6
1,559,521 - +0.0
1,559,538 + +1.8
1,559,539 - +0.0
1,559,632 + -1.9
1,559,633 - +0.6
1,559,633 - -0.6
1,559,633 - -0.3
1,559,685 + +0.7
1,559,708 + -1.2
1,559,709 - -1.4
1,559,982 + PfGW456L13_1411 0.23 +0.7
1,559,983 - PfGW456L13_1411 0.23 +0.0
1,560,005 + PfGW456L13_1411 0.25 +0.4
1,560,005 + PfGW456L13_1411 0.25 +0.2
1,560,006 - PfGW456L13_1411 0.25 -1.7
1,560,006 - PfGW456L13_1411 0.25 -0.2
1,560,006 - PfGW456L13_1411 0.25 +0.8
1,560,026 + PfGW456L13_1411 0.27 +0.0
1,560,041 + PfGW456L13_1411 0.29 +0.3
1,560,041 + PfGW456L13_1411 0.29 +1.2
1,560,071 + PfGW456L13_1411 0.32 -0.6
1,560,071 + PfGW456L13_1411 0.32 -0.1
1,560,071 + PfGW456L13_1411 0.32 -0.4
1,560,183 + PfGW456L13_1411 0.45 +0.8
1,560,184 - PfGW456L13_1411 0.45 -0.4
1,560,190 + PfGW456L13_1411 0.45 +0.0
1,560,190 + PfGW456L13_1411 0.45 +0.1
1,560,190 + PfGW456L13_1411 0.45 +1.4
1,560,190 + PfGW456L13_1411 0.45 -0.7
1,560,190 + PfGW456L13_1411 0.45 +0.8
1,560,191 - PfGW456L13_1411 0.45 +0.2
1,560,191 - PfGW456L13_1411 0.45 +0.3
1,560,191 - PfGW456L13_1411 0.45 +0.5
1,560,191 - PfGW456L13_1411 0.45 -0.0
1,560,191 - PfGW456L13_1411 0.45 -1.0
1,560,269 + PfGW456L13_1411 0.54 -0.8
1,560,270 - PfGW456L13_1411 0.54 -0.0
1,560,270 - PfGW456L13_1411 0.54 +1.0
1,560,323 + PfGW456L13_1411 0.60 -0.2
1,560,323 + PfGW456L13_1411 0.60 +0.0
1,560,324 - PfGW456L13_1411 0.60 +1.4
1,560,324 - PfGW456L13_1411 0.60 +1.6
1,560,324 - PfGW456L13_1411 0.60 -1.0
1,560,479 - PfGW456L13_1411 0.77 +0.4

Or see this region's nucleotide sequence