Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1285

Experiment: KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1284 and PfGW456L13_1285 are separated by 9 nucleotidesPfGW456L13_1285 and PfGW456L13_1286 are separated by 162 nucleotides PfGW456L13_1284 - Putative transport protein, at 1,423,838 to 1,425,235 _1284 PfGW456L13_1285 - Single-stranded DNA-binding protein, at 1,425,245 to 1,425,763 _1285 PfGW456L13_1286 - Transcriptional Regulator, AraC family, at 1,425,926 to 1,426,798 _1286 Position (kb) 1425 1426Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1425.007 kb on + strand, within PfGW456L13_1284at 1425.026 kb on + strand, within PfGW456L13_1284at 1425.026 kb on + strand, within PfGW456L13_1284at 1425.228 kb on + strandat 1425.233 kb on + strandat 1425.780 kb on + strandat 1425.780 kb on + strandat 1425.781 kb on - strandat 1425.781 kb on - strandat 1425.806 kb on + strandat 1425.832 kb on + strandat 1425.888 kb on - strandat 1425.940 kb on + strandat 1425.940 kb on + strandat 1425.940 kb on + strandat 1425.940 kb on + strandat 1425.941 kb on - strandat 1425.941 kb on - strandat 1425.981 kb on - strandat 1425.981 kb on - strandat 1426.010 kb on + strandat 1426.010 kb on + strandat 1426.036 kb on + strand, within PfGW456L13_1286at 1426.036 kb on + strand, within PfGW456L13_1286at 1426.036 kb on + strand, within PfGW456L13_1286at 1426.036 kb on + strand, within PfGW456L13_1286at 1426.037 kb on - strand, within PfGW456L13_1286at 1426.037 kb on - strand, within PfGW456L13_1286at 1426.037 kb on - strand, within PfGW456L13_1286at 1426.037 kb on - strand, within PfGW456L13_1286at 1426.037 kb on - strand, within PfGW456L13_1286at 1426.179 kb on + strand, within PfGW456L13_1286at 1426.179 kb on + strand, within PfGW456L13_1286at 1426.179 kb on + strand, within PfGW456L13_1286at 1426.179 kb on + strand, within PfGW456L13_1286at 1426.179 kb on + strand, within PfGW456L13_1286at 1426.180 kb on - strand, within PfGW456L13_1286at 1426.180 kb on - strand, within PfGW456L13_1286at 1426.180 kb on - strand, within PfGW456L13_1286at 1426.180 kb on - strand, within PfGW456L13_1286at 1426.180 kb on - strand, within PfGW456L13_1286at 1426.180 kb on - strand, within PfGW456L13_1286at 1426.213 kb on + strand, within PfGW456L13_1286at 1426.221 kb on + strand, within PfGW456L13_1286at 1426.221 kb on + strand, within PfGW456L13_1286at 1426.458 kb on + strand, within PfGW456L13_1286at 1426.458 kb on + strand, within PfGW456L13_1286at 1426.459 kb on - strand, within PfGW456L13_1286at 1426.536 kb on - strand, within PfGW456L13_1286at 1426.536 kb on - strand, within PfGW456L13_1286at 1426.536 kb on - strand, within PfGW456L13_1286at 1426.580 kb on + strand, within PfGW456L13_1286at 1426.581 kb on - strand, within PfGW456L13_1286at 1426.581 kb on - strand, within PfGW456L13_1286at 1426.581 kb on - strand, within PfGW456L13_1286at 1426.665 kb on - strand, within PfGW456L13_1286

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
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1,425,007 + PfGW456L13_1284 0.84 -1.0
1,425,026 + PfGW456L13_1284 0.85 -1.4
1,425,026 + PfGW456L13_1284 0.85 -1.0
1,425,228 + +1.2
1,425,233 + +0.3
1,425,780 + +0.7
1,425,780 + -0.6
1,425,781 - +1.8
1,425,781 - +0.5
1,425,806 + +0.6
1,425,832 + -1.0
1,425,888 - +0.8
1,425,940 + +0.9
1,425,940 + -0.1
1,425,940 + +0.8
1,425,940 + +1.1
1,425,941 - +0.4
1,425,941 - -0.8
1,425,981 - +0.4
1,425,981 - +0.9
1,426,010 + +0.6
1,426,010 + -1.2
1,426,036 + PfGW456L13_1286 0.13 -0.5
1,426,036 + PfGW456L13_1286 0.13 -0.9
1,426,036 + PfGW456L13_1286 0.13 -0.6
1,426,036 + PfGW456L13_1286 0.13 +0.5
1,426,037 - PfGW456L13_1286 0.13 +1.1
1,426,037 - PfGW456L13_1286 0.13 -0.6
1,426,037 - PfGW456L13_1286 0.13 -0.4
1,426,037 - PfGW456L13_1286 0.13 -3.5
1,426,037 - PfGW456L13_1286 0.13 -0.4
1,426,179 + PfGW456L13_1286 0.29 -0.8
1,426,179 + PfGW456L13_1286 0.29 -0.8
1,426,179 + PfGW456L13_1286 0.29 -1.2
1,426,179 + PfGW456L13_1286 0.29 -0.1
1,426,179 + PfGW456L13_1286 0.29 +1.0
1,426,180 - PfGW456L13_1286 0.29 +0.1
1,426,180 - PfGW456L13_1286 0.29 +0.3
1,426,180 - PfGW456L13_1286 0.29 +1.4
1,426,180 - PfGW456L13_1286 0.29 +1.5
1,426,180 - PfGW456L13_1286 0.29 -0.6
1,426,180 - PfGW456L13_1286 0.29 -0.4
1,426,213 + PfGW456L13_1286 0.33 -1.5
1,426,221 + PfGW456L13_1286 0.34 +0.4
1,426,221 + PfGW456L13_1286 0.34 -0.5
1,426,458 + PfGW456L13_1286 0.61 -0.5
1,426,458 + PfGW456L13_1286 0.61 +0.0
1,426,459 - PfGW456L13_1286 0.61 +0.6
1,426,536 - PfGW456L13_1286 0.70 +0.1
1,426,536 - PfGW456L13_1286 0.70 +0.9
1,426,536 - PfGW456L13_1286 0.70 +0.0
1,426,580 + PfGW456L13_1286 0.75 -0.3
1,426,581 - PfGW456L13_1286 0.75 +0.2
1,426,581 - PfGW456L13_1286 0.75 -0.1
1,426,581 - PfGW456L13_1286 0.75 +0.2
1,426,665 - PfGW456L13_1286 0.85 +0.6

Or see this region's nucleotide sequence