Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0656

Experiment: Methyl-B-D-galactopyranoside 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0654 and Echvi_0655 are separated by 82 nucleotidesEchvi_0655 and Echvi_0656 are separated by 74 nucleotidesEchvi_0656 and Echvi_0657 are separated by 10 nucleotidesEchvi_0657 and Echvi_0658 are separated by 215 nucleotides Echvi_0654: Echvi_0654 - undecaprenyl diphosphate synthase, at 739,160 to 739,897 _0654 Echvi_0655: Echvi_0655 - hypothetical protein, at 739,980 to 740,771 _0655 Echvi_0656: Echvi_0656 - Predicted sugar kinase, at 740,846 to 741,721 _0656 Echvi_0657: Echvi_0657 - hypothetical protein, at 741,732 to 742,397 _0657 Echvi_0658: Echvi_0658 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 742,613 to 743,203 _0658 Position (kb) 740 741 742Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 739.932 kb on - strandat 739.978 kb on - strandat 740.041 kb on + strandat 740.068 kb on + strand, within Echvi_0655at 740.092 kb on + strand, within Echvi_0655at 740.093 kb on - strand, within Echvi_0655at 740.211 kb on + strand, within Echvi_0655at 740.242 kb on + strand, within Echvi_0655at 740.243 kb on - strand, within Echvi_0655at 740.243 kb on - strand, within Echvi_0655at 740.287 kb on + strand, within Echvi_0655at 740.353 kb on + strand, within Echvi_0655at 740.354 kb on - strand, within Echvi_0655at 740.383 kb on + strand, within Echvi_0655at 740.411 kb on - strand, within Echvi_0655at 740.425 kb on + strand, within Echvi_0655at 740.490 kb on - strand, within Echvi_0655at 740.505 kb on + strand, within Echvi_0655at 740.505 kb on + strand, within Echvi_0655at 740.505 kb on + strand, within Echvi_0655at 740.505 kb on + strand, within Echvi_0655at 740.505 kb on + strand, within Echvi_0655at 740.505 kb on + strand, within Echvi_0655at 740.506 kb on - strand, within Echvi_0655at 740.506 kb on - strand, within Echvi_0655at 740.545 kb on + strand, within Echvi_0655at 740.546 kb on - strand, within Echvi_0655at 740.630 kb on + strand, within Echvi_0655at 740.631 kb on - strand, within Echvi_0655at 740.631 kb on - strand, within Echvi_0655at 740.633 kb on + strand, within Echvi_0655at 740.634 kb on - strand, within Echvi_0655at 740.634 kb on - strand, within Echvi_0655at 740.664 kb on + strand, within Echvi_0655at 740.665 kb on - strand, within Echvi_0655at 740.665 kb on - strand, within Echvi_0655at 740.665 kb on - strand, within Echvi_0655at 740.718 kb on + strandat 740.786 kb on + strandat 740.820 kb on - strandat 740.836 kb on + strandat 740.837 kb on - strandat 741.733 kb on + strandat 741.733 kb on + strandat 741.734 kb on - strandat 741.738 kb on - strandat 741.802 kb on + strand, within Echvi_0657at 741.802 kb on + strand, within Echvi_0657at 741.802 kb on + strand, within Echvi_0657at 741.820 kb on + strand, within Echvi_0657at 741.876 kb on + strand, within Echvi_0657at 741.876 kb on + strand, within Echvi_0657at 741.877 kb on - strand, within Echvi_0657at 741.888 kb on + strand, within Echvi_0657at 741.954 kb on + strand, within Echvi_0657at 741.955 kb on - strand, within Echvi_0657at 741.982 kb on + strand, within Echvi_0657at 742.087 kb on + strand, within Echvi_0657at 742.091 kb on + strand, within Echvi_0657at 742.091 kb on + strand, within Echvi_0657at 742.104 kb on + strand, within Echvi_0657at 742.105 kb on - strand, within Echvi_0657at 742.118 kb on + strand, within Echvi_0657at 742.118 kb on + strand, within Echvi_0657at 742.156 kb on + strand, within Echvi_0657at 742.156 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.161 kb on - strand, within Echvi_0657at 742.161 kb on - strand, within Echvi_0657at 742.161 kb on - strand, within Echvi_0657at 742.240 kb on + strand, within Echvi_0657at 742.240 kb on + strand, within Echvi_0657at 742.241 kb on - strand, within Echvi_0657at 742.241 kb on - strand, within Echvi_0657at 742.241 kb on - strand, within Echvi_0657at 742.296 kb on + strand, within Echvi_0657at 742.296 kb on + strand, within Echvi_0657at 742.357 kb on - strandat 742.388 kb on - strandat 742.411 kb on + strandat 742.412 kb on - strandat 742.418 kb on + strandat 742.485 kb on + strandat 742.523 kb on - strandat 742.537 kb on - strandat 742.568 kb on - strandat 742.572 kb on + strandat 742.598 kb on + strandat 742.598 kb on + strandat 742.598 kb on + strandat 742.598 kb on + strandat 742.599 kb on - strandat 742.602 kb on + strandat 742.603 kb on - strandat 742.603 kb on - strandat 742.603 kb on - strandat 742.603 kb on - strandat 742.647 kb on + strandat 742.683 kb on + strand, within Echvi_0658at 742.684 kb on - strand, within Echvi_0658at 742.695 kb on + strand, within Echvi_0658at 742.695 kb on + strand, within Echvi_0658at 742.696 kb on - strand, within Echvi_0658

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C)
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739,932 - -0.4
739,978 - +1.9
740,041 + -1.6
740,068 + Echvi_0655 0.11 -1.9
740,092 + Echvi_0655 0.14 +0.8
740,093 - Echvi_0655 0.14 -0.2
740,211 + Echvi_0655 0.29 -0.3
740,242 + Echvi_0655 0.33 -0.1
740,243 - Echvi_0655 0.33 +0.4
740,243 - Echvi_0655 0.33 -0.1
740,287 + Echvi_0655 0.39 +0.2
740,353 + Echvi_0655 0.47 +1.2
740,354 - Echvi_0655 0.47 +1.3
740,383 + Echvi_0655 0.51 -1.2
740,411 - Echvi_0655 0.54 -0.6
740,425 + Echvi_0655 0.56 +0.0
740,490 - Echvi_0655 0.64 -0.5
740,505 + Echvi_0655 0.66 +0.7
740,505 + Echvi_0655 0.66 +0.0
740,505 + Echvi_0655 0.66 +2.0
740,505 + Echvi_0655 0.66 +0.2
740,505 + Echvi_0655 0.66 +1.1
740,505 + Echvi_0655 0.66 +0.7
740,506 - Echvi_0655 0.66 +0.5
740,506 - Echvi_0655 0.66 +1.1
740,545 + Echvi_0655 0.71 +1.1
740,546 - Echvi_0655 0.71 -0.0
740,630 + Echvi_0655 0.82 -0.2
740,631 - Echvi_0655 0.82 +0.1
740,631 - Echvi_0655 0.82 -0.7
740,633 + Echvi_0655 0.82 -0.7
740,634 - Echvi_0655 0.83 +0.8
740,634 - Echvi_0655 0.83 -0.5
740,664 + Echvi_0655 0.86 -1.0
740,665 - Echvi_0655 0.86 +1.0
740,665 - Echvi_0655 0.86 -0.7
740,665 - Echvi_0655 0.86 -1.0
740,718 + -1.9
740,786 + +0.7
740,820 - +0.6
740,836 + -0.1
740,837 - -0.1
741,733 + -0.6
741,733 + -1.7
741,734 - +0.7
741,738 - +0.2
741,802 + Echvi_0657 0.11 -2.2
741,802 + Echvi_0657 0.11 -2.6
741,802 + Echvi_0657 0.11 -0.3
741,820 + Echvi_0657 0.13 +0.5
741,876 + Echvi_0657 0.22 -0.3
741,876 + Echvi_0657 0.22 +0.4
741,877 - Echvi_0657 0.22 -0.0
741,888 + Echvi_0657 0.23 -1.2
741,954 + Echvi_0657 0.33 -1.0
741,955 - Echvi_0657 0.33 +0.5
741,982 + Echvi_0657 0.38 -1.7
742,087 + Echvi_0657 0.53 +1.1
742,091 + Echvi_0657 0.54 -0.2
742,091 + Echvi_0657 0.54 -2.2
742,104 + Echvi_0657 0.56 -2.6
742,105 - Echvi_0657 0.56 +0.3
742,118 + Echvi_0657 0.58 -0.3
742,118 + Echvi_0657 0.58 -1.1
742,156 + Echvi_0657 0.64 -1.3
742,156 + Echvi_0657 0.64 -1.1
742,160 + Echvi_0657 0.64 -2.7
742,160 + Echvi_0657 0.64 -1.3
742,160 + Echvi_0657 0.64 -1.0
742,160 + Echvi_0657 0.64 -2.6
742,160 + Echvi_0657 0.64 -1.8
742,160 + Echvi_0657 0.64 -0.2
742,160 + Echvi_0657 0.64 -1.4
742,161 - Echvi_0657 0.64 -2.7
742,161 - Echvi_0657 0.64 -1.6
742,161 - Echvi_0657 0.64 -0.4
742,240 + Echvi_0657 0.76 -0.2
742,240 + Echvi_0657 0.76 +0.1
742,241 - Echvi_0657 0.76 +2.5
742,241 - Echvi_0657 0.76 +0.1
742,241 - Echvi_0657 0.76 -0.2
742,296 + Echvi_0657 0.85 -2.1
742,296 + Echvi_0657 0.85 -0.6
742,357 - -0.2
742,388 - +0.4
742,411 + -0.0
742,412 - -0.8
742,418 + -1.4
742,485 + +0.6
742,523 - +0.7
742,537 - +0.1
742,568 - -0.9
742,572 + +0.3
742,598 + +1.7
742,598 + -0.8
742,598 + -0.1
742,598 + +0.7
742,599 - -0.9
742,602 + +0.1
742,603 - -0.3
742,603 - +1.9
742,603 - -1.2
742,603 - -0.8
742,647 + +0.3
742,683 + Echvi_0658 0.12 -0.7
742,684 - Echvi_0658 0.12 +0.6
742,695 + Echvi_0658 0.14 -0.1
742,695 + Echvi_0658 0.14 +0.7
742,696 - Echvi_0658 0.14 -2.9

Or see this region's nucleotide sequence