Strain Fitness in Agrobacterium fabrum C58 around Atu0305

Experiment: R2A with chromate 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0303 and Atu0304 are separated by 16 nucleotidesAtu0304 and Atu0305 are separated by 108 nucleotidesAtu0305 and Atu0306 are separated by 170 nucleotides Atu0303: Atu0303 - hypothetical protein, at 296,071 to 296,439 Atu0303 Atu0304: Atu0304 - nodulation protein L, at 296,456 to 297,016 Atu0304 Atu0305: Atu0305 - ABC transporter, substrate binding protein (sn-glycerol 3-phosphate), at 297,125 to 298,423 Atu0305 Atu0306: Atu0306 - ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate), at 298,594 to 299,475 Atu0306 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2at 296.133 kb on + strand, within Atu0303at 296.144 kb on + strand, within Atu0303at 296.152 kb on - strand, within Atu0303at 296.157 kb on + strand, within Atu0303at 296.335 kb on - strand, within Atu0303at 296.492 kb on + strandat 296.502 kb on - strandat 296.525 kb on - strand, within Atu0304at 296.557 kb on + strand, within Atu0304at 296.557 kb on + strand, within Atu0304at 296.565 kb on - strand, within Atu0304at 296.569 kb on + strand, within Atu0304at 296.676 kb on + strand, within Atu0304at 296.676 kb on + strand, within Atu0304at 296.684 kb on - strand, within Atu0304at 296.728 kb on - strand, within Atu0304at 296.745 kb on - strand, within Atu0304at 296.774 kb on - strand, within Atu0304at 296.779 kb on + strand, within Atu0304at 296.779 kb on + strand, within Atu0304at 296.782 kb on - strand, within Atu0304at 296.787 kb on - strand, within Atu0304at 296.805 kb on + strand, within Atu0304at 296.856 kb on + strand, within Atu0304at 296.872 kb on - strand, within Atu0304at 296.914 kb on + strand, within Atu0304at 296.924 kb on - strand, within Atu0304at 296.924 kb on - strand, within Atu0304at 296.954 kb on + strand, within Atu0304at 296.954 kb on + strand, within Atu0304at 296.958 kb on - strand, within Atu0304at 296.973 kb on - strandat 297.086 kb on - strandat 297.186 kb on - strandat 297.188 kb on - strandat 297.213 kb on + strandat 297.213 kb on + strandat 297.221 kb on - strandat 297.251 kb on + strandat 297.269 kb on + strand, within Atu0305at 297.277 kb on - strand, within Atu0305at 297.333 kb on - strand, within Atu0305at 297.523 kb on - strand, within Atu0305at 297.551 kb on + strand, within Atu0305at 297.554 kb on - strand, within Atu0305at 297.610 kb on + strand, within Atu0305at 297.610 kb on - strand, within Atu0305at 297.612 kb on + strand, within Atu0305at 297.669 kb on - strand, within Atu0305at 297.669 kb on - strand, within Atu0305at 297.678 kb on - strand, within Atu0305at 297.757 kb on - strand, within Atu0305at 297.757 kb on - strand, within Atu0305at 297.783 kb on - strand, within Atu0305at 297.817 kb on + strand, within Atu0305at 297.825 kb on - strand, within Atu0305at 297.908 kb on - strand, within Atu0305at 297.916 kb on - strand, within Atu0305at 297.928 kb on + strand, within Atu0305at 297.949 kb on - strand, within Atu0305at 297.956 kb on + strand, within Atu0305at 297.964 kb on - strand, within Atu0305at 297.997 kb on + strand, within Atu0305at 297.997 kb on + strand, within Atu0305at 298.100 kb on + strand, within Atu0305at 298.138 kb on + strand, within Atu0305at 298.139 kb on - strand, within Atu0305at 298.159 kb on + strand, within Atu0305at 298.167 kb on - strand, within Atu0305at 298.180 kb on + strand, within Atu0305at 298.185 kb on + strand, within Atu0305at 298.187 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.261 kb on + strand, within Atu0305at 298.269 kb on - strand, within Atu0305at 298.269 kb on - strand, within Atu0305at 298.269 kb on - strand, within Atu0305at 298.269 kb on - strand, within Atu0305at 298.269 kb on - strand, within Atu0305at 298.269 kb on - strand, within Atu0305at 298.297 kb on - strandat 298.302 kb on - strandat 298.324 kb on - strandat 298.479 kb on + strandat 298.489 kb on + strandat 298.489 kb on + strandat 298.489 kb on + strandat 298.504 kb on + strandat 298.517 kb on - strandat 298.517 kb on - strandat 298.560 kb on + strandat 298.568 kb on - strandat 298.608 kb on + strandat 298.625 kb on + strandat 298.816 kb on + strand, within Atu0306at 298.858 kb on - strand, within Atu0306at 298.911 kb on - strand, within Atu0306at 298.935 kb on - strand, within Atu0306at 299.022 kb on - strand, within Atu0306at 299.028 kb on + strand, within Atu0306at 299.073 kb on - strand, within Atu0306at 299.083 kb on + strand, within Atu0306at 299.193 kb on + strand, within Atu0306at 299.201 kb on - strand, within Atu0306at 299.230 kb on + strand, within Atu0306at 299.258 kb on + strand, within Atu0306at 299.276 kb on + strand, within Atu0306at 299.276 kb on - strand, within Atu0306at 299.276 kb on - strand, within Atu0306at 299.312 kb on - strand, within Atu0306at 299.334 kb on + strand, within Atu0306at 299.334 kb on + strand, within Atu0306at 299.344 kb on + strand, within Atu0306

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with chromate 0.1 mM
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296,133 + Atu0303 0.17 -0.6
296,144 + Atu0303 0.20 +1.9
296,152 - Atu0303 0.22 +0.4
296,157 + Atu0303 0.23 +0.2
296,335 - Atu0303 0.72 -0.0
296,492 + +0.0
296,502 - +0.3
296,525 - Atu0304 0.12 +0.4
296,557 + Atu0304 0.18 -0.3
296,557 + Atu0304 0.18 +1.3
296,565 - Atu0304 0.19 -0.9
296,569 + Atu0304 0.20 -0.2
296,676 + Atu0304 0.39 -0.0
296,676 + Atu0304 0.39 +0.9
296,684 - Atu0304 0.41 +0.1
296,728 - Atu0304 0.48 -0.1
296,745 - Atu0304 0.52 -0.2
296,774 - Atu0304 0.57 -0.8
296,779 + Atu0304 0.58 +0.6
296,779 + Atu0304 0.58 +0.2
296,782 - Atu0304 0.58 +0.2
296,787 - Atu0304 0.59 +0.5
296,805 + Atu0304 0.62 +0.7
296,856 + Atu0304 0.71 +0.1
296,872 - Atu0304 0.74 +1.6
296,914 + Atu0304 0.82 +0.7
296,924 - Atu0304 0.83 +0.1
296,924 - Atu0304 0.83 +0.9
296,954 + Atu0304 0.89 +0.1
296,954 + Atu0304 0.89 -0.1
296,958 - Atu0304 0.89 -0.7
296,973 - -1.3
297,086 - +0.2
297,186 - -0.1
297,188 - -0.4
297,213 + -0.4
297,213 + +1.2
297,221 - +0.2
297,251 + -0.5
297,269 + Atu0305 0.11 +0.2
297,277 - Atu0305 0.12 +0.1
297,333 - Atu0305 0.16 +0.4
297,523 - Atu0305 0.31 +0.5
297,551 + Atu0305 0.33 +1.4
297,554 - Atu0305 0.33 -0.0
297,610 + Atu0305 0.37 -0.1
297,610 - Atu0305 0.37 +0.1
297,612 + Atu0305 0.37 +0.2
297,669 - Atu0305 0.42 +0.0
297,669 - Atu0305 0.42 -0.0
297,678 - Atu0305 0.43 +1.2
297,757 - Atu0305 0.49 -0.2
297,757 - Atu0305 0.49 +0.0
297,783 - Atu0305 0.51 +0.5
297,817 + Atu0305 0.53 +0.3
297,825 - Atu0305 0.54 +0.4
297,908 - Atu0305 0.60 +0.3
297,916 - Atu0305 0.61 +0.3
297,928 + Atu0305 0.62 -0.0
297,949 - Atu0305 0.63 -0.4
297,956 + Atu0305 0.64 +0.9
297,964 - Atu0305 0.65 +1.6
297,997 + Atu0305 0.67 +1.1
297,997 + Atu0305 0.67 -0.2
298,100 + Atu0305 0.75 +0.4
298,138 + Atu0305 0.78 -0.4
298,139 - Atu0305 0.78 +0.3
298,159 + Atu0305 0.80 +0.8
298,167 - Atu0305 0.80 +0.5
298,180 + Atu0305 0.81 +0.3
298,185 + Atu0305 0.82 +1.2
298,187 + Atu0305 0.82 +0.5
298,261 + Atu0305 0.87 +0.7
298,261 + Atu0305 0.87 -0.3
298,261 + Atu0305 0.87 -0.1
298,261 + Atu0305 0.87 +0.2
298,261 + Atu0305 0.87 +0.2
298,261 + Atu0305 0.87 -0.3
298,261 + Atu0305 0.87 -0.1
298,261 + Atu0305 0.87 +0.0
298,269 - Atu0305 0.88 +2.7
298,269 - Atu0305 0.88 -1.7
298,269 - Atu0305 0.88 -0.2
298,269 - Atu0305 0.88 +0.4
298,269 - Atu0305 0.88 +1.1
298,269 - Atu0305 0.88 +0.1
298,297 - -0.2
298,302 - +0.3
298,324 - +0.5
298,479 + -0.1
298,489 + +0.2
298,489 + +0.4
298,489 + -0.4
298,504 + +0.5
298,517 - -2.0
298,517 - -0.2
298,560 + +0.9
298,568 - +0.2
298,608 + +0.2
298,625 + -0.4
298,816 + Atu0306 0.25 -0.1
298,858 - Atu0306 0.30 -0.7
298,911 - Atu0306 0.36 +0.0
298,935 - Atu0306 0.39 -0.2
299,022 - Atu0306 0.49 -0.3
299,028 + Atu0306 0.49 +0.0
299,073 - Atu0306 0.54 +0.2
299,083 + Atu0306 0.55 -0.1
299,193 + Atu0306 0.68 +0.2
299,201 - Atu0306 0.69 +0.1
299,230 + Atu0306 0.72 +1.1
299,258 + Atu0306 0.75 -0.0
299,276 + Atu0306 0.77 +0.4
299,276 - Atu0306 0.77 +1.1
299,276 - Atu0306 0.77 -0.1
299,312 - Atu0306 0.81 -0.1
299,334 + Atu0306 0.84 -0.2
299,334 + Atu0306 0.84 +0.0
299,344 + Atu0306 0.85 +2.3

Or see this region's nucleotide sequence