Experiment: 3-methyl-1-butanol 0.625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt murP and b2430 are separated by 4 nucleotides b2430 and b2431 are separated by 239 nucleotides
b2429: murP - N-acetylmuramic acid phosphotransfer permease (NCBI), at 2,544,695 to 2,546,119
murP
b2430: b2430 - putative beta-lactamase (VIMSS), at 2,546,124 to 2,547,428
b2430
b2431: b2431 - orf, hypothetical protein (VIMSS), at 2,547,668 to 2,548,567
b2431
Position (kb)
2546
2547
2548 Strain fitness (log2 ratio)
-2
-1
0
1 at 2545.234 kb on - strand, within murP at 2545.234 kb on - strand, within murP at 2545.234 kb on - strand, within murP at 2545.236 kb on - strand, within murP at 2545.306 kb on - strand, within murP at 2545.347 kb on + strand, within murP at 2545.445 kb on - strand, within murP at 2545.471 kb on - strand, within murP at 2545.471 kb on - strand, within murP at 2545.494 kb on - strand, within murP at 2545.494 kb on - strand, within murP at 2545.559 kb on + strand, within murP at 2545.559 kb on + strand, within murP at 2545.620 kb on + strand, within murP at 2545.637 kb on + strand, within murP at 2545.761 kb on - strand, within murP at 2545.768 kb on + strand, within murP at 2545.768 kb on + strand, within murP at 2545.786 kb on - strand, within murP at 2545.886 kb on + strand, within murP at 2546.146 kb on - strand at 2546.233 kb on - strand at 2546.239 kb on + strand at 2546.412 kb on + strand, within b2430 at 2546.420 kb on - strand, within b2430 at 2546.420 kb on - strand, within b2430 at 2546.423 kb on + strand, within b2430 at 2546.489 kb on - strand, within b2430 at 2546.489 kb on - strand, within b2430 at 2546.663 kb on - strand, within b2430 at 2546.674 kb on + strand, within b2430 at 2546.758 kb on + strand, within b2430 at 2546.844 kb on + strand, within b2430 at 2546.969 kb on - strand, within b2430 at 2546.969 kb on - strand, within b2430 at 2547.030 kb on + strand, within b2430 at 2547.062 kb on - strand, within b2430 at 2547.062 kb on - strand, within b2430 at 2547.071 kb on - strand, within b2430 at 2547.087 kb on - strand, within b2430 at 2547.141 kb on - strand, within b2430 at 2547.319 kb on - strand at 2547.338 kb on - strand at 2547.495 kb on + strand at 2547.495 kb on + strand at 2547.774 kb on + strand, within b2431 at 2547.790 kb on + strand, within b2431 at 2547.798 kb on - strand, within b2431 at 2547.813 kb on + strand, within b2431 at 2547.824 kb on + strand, within b2431 at 2547.827 kb on - strand, within b2431 at 2547.830 kb on - strand, within b2431 at 2547.834 kb on + strand, within b2431 at 2547.929 kb on - strand at 2547.929 kb on - strand, within b2431 at 2547.937 kb on - strand, within b2431 at 2547.937 kb on - strand, within b2431 at 2547.991 kb on + strand, within b2431 at 2547.999 kb on - strand, within b2431 at 2548.032 kb on - strand, within b2431 at 2548.032 kb on - strand, within b2431 at 2548.044 kb on - strand, within b2431 at 2548.054 kb on + strand, within b2431 at 2548.054 kb on + strand, within b2431 at 2548.072 kb on + strand, within b2431 at 2548.163 kb on + strand, within b2431 at 2548.201 kb on + strand, within b2431 at 2548.203 kb on + strand, within b2431 at 2548.229 kb on - strand, within b2431 at 2548.322 kb on - strand, within b2431
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.625 vol% remove 2,545,234 - murP b2429 0.38 -0.1 2,545,234 - murP b2429 0.38 -0.3 2,545,234 - murP b2429 0.38 -0.0 2,545,236 - murP b2429 0.38 -0.5 2,545,306 - murP b2429 0.43 +0.1 2,545,347 + murP b2429 0.46 -0.6 2,545,445 - murP b2429 0.53 +0.7 2,545,471 - murP b2429 0.54 -1.5 2,545,471 - murP b2429 0.54 +1.1 2,545,494 - murP b2429 0.56 +0.1 2,545,494 - murP b2429 0.56 -0.0 2,545,559 + murP b2429 0.61 +0.0 2,545,559 + murP b2429 0.61 -0.3 2,545,620 + murP b2429 0.65 -0.5 2,545,637 + murP b2429 0.66 +0.4 2,545,761 - murP b2429 0.75 -0.5 2,545,768 + murP b2429 0.75 +0.8 2,545,768 + murP b2429 0.75 -0.3 2,545,786 - murP b2429 0.77 +1.1 2,545,886 + murP b2429 0.84 +0.5 2,546,146 - +0.9 2,546,233 - +0.4 2,546,239 + +0.1 2,546,412 + b2430 b2430 0.22 -0.1 2,546,420 - b2430 b2430 0.23 +0.5 2,546,420 - b2430 b2430 0.23 +0.1 2,546,423 + b2430 b2430 0.23 -0.3 2,546,489 - b2430 b2430 0.28 -0.5 2,546,489 - b2430 b2430 0.28 +0.4 2,546,663 - b2430 b2430 0.41 +0.3 2,546,674 + b2430 b2430 0.42 -0.7 2,546,758 + b2430 b2430 0.49 +0.0 2,546,844 + b2430 b2430 0.55 -0.4 2,546,969 - b2430 b2430 0.65 -1.0 2,546,969 - b2430 b2430 0.65 -0.7 2,547,030 + b2430 b2430 0.69 -0.0 2,547,062 - b2430 b2430 0.72 +0.6 2,547,062 - b2430 b2430 0.72 +0.6 2,547,071 - b2430 b2430 0.73 -0.0 2,547,087 - b2430 b2430 0.74 +0.4 2,547,141 - b2430 b2430 0.78 +0.8 2,547,319 - +1.1 2,547,338 - +0.1 2,547,495 + +0.2 2,547,495 + +0.3 2,547,774 + b2431 b2431 0.12 +0.4 2,547,790 + b2431 b2431 0.14 -0.6 2,547,798 - b2431 b2431 0.14 -0.0 2,547,813 + b2431 b2431 0.16 +0.1 2,547,824 + b2431 b2431 0.17 -0.1 2,547,827 - b2431 b2431 0.18 -2.0 2,547,830 - b2431 b2431 0.18 +0.2 2,547,834 + b2431 b2431 0.18 +0.2 2,547,929 - +1.1 2,547,929 - b2431 b2431 0.29 +0.5 2,547,937 - b2431 b2431 0.30 -0.2 2,547,937 - b2431 b2431 0.30 -0.1 2,547,991 + b2431 b2431 0.36 +0.8 2,547,999 - b2431 b2431 0.37 -0.2 2,548,032 - b2431 b2431 0.40 -2.0 2,548,032 - b2431 b2431 0.40 +0.2 2,548,044 - b2431 b2431 0.42 -0.4 2,548,054 + b2431 b2431 0.43 +0.8 2,548,054 + b2431 b2431 0.43 -0.2 2,548,072 + b2431 b2431 0.45 +0.5 2,548,163 + b2431 b2431 0.55 -0.2 2,548,201 + b2431 b2431 0.59 +0.2 2,548,203 + b2431 b2431 0.59 -2.2 2,548,229 - b2431 b2431 0.62 -0.3 2,548,322 - b2431 b2431 0.73 +0.3
Or see this region's nucleotide sequence