Strain Fitness in Escherichia coli BW25113 around b4699
Experiment: 3-methyl-1-butanol 0.625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 0.625 vol% |
---|---|---|---|---|---|
remove | |||||
1,406,243 | + | ydaN | b1342 | 0.17 | -1.4 |
1,406,396 | + | ydaN | b1342 | 0.33 | +0.2 |
1,406,441 | + | ydaN | b1342 | 0.37 | -0.3 |
1,406,441 | + | ydaN | b1342 | 0.37 | +0.0 |
1,406,471 | + | ydaN | b1342 | 0.40 | -0.4 |
1,406,479 | - | ydaN | b1342 | 0.41 | -1.5 |
1,406,521 | + | ydaN | b1342 | 0.45 | +0.2 |
1,406,521 | + | ydaN | b1342 | 0.45 | -0.3 |
1,406,622 | + | ydaN | b1342 | 0.56 | +0.6 |
1,406,678 | - | ydaN | b1342 | 0.61 | +0.1 |
1,406,727 | + | ydaN | b1342 | 0.66 | +0.2 |
1,406,727 | + | ydaN | b1342 | 0.66 | +0.5 |
1,406,783 | + | ydaN | b1342 | 0.72 | +0.4 |
1,406,812 | - | ydaN | b1342 | 0.75 | -0.1 |
1,406,814 | - | ydaN | b1342 | 0.75 | -0.2 |
1,406,822 | - | ydaN | b1342 | 0.76 | +0.5 |
1,406,876 | + | ydaN | b1342 | 0.82 | +1.1 |
1,406,879 | - | ydaN | b1342 | 0.82 | +0.2 |
1,406,879 | - | ydaN | b1342 | 0.82 | -0.5 |
1,407,150 | - | +0.2 | |||
1,407,225 | - | fnrS | b4699 | 0.59 | -0.2 |
1,407,299 | - | -0.0 | |||
1,407,384 | + | +0.1 | |||
1,407,384 | + | +0.0 | |||
1,407,421 | + | -0.5 | |||
1,407,429 | - | -1.3 | |||
1,407,799 | + | dbpA | b1343 | 0.19 | +0.7 |
1,408,018 | + | dbpA | b1343 | 0.35 | -0.1 |
1,408,018 | + | dbpA | b1343 | 0.35 | +0.5 |
1,408,236 | + | dbpA | b1343 | 0.51 | +1.2 |
1,408,267 | - | dbpA | b1343 | 0.53 | -0.1 |
Or see this region's nucleotide sequence