Strain Fitness in Pseudomonas putida KT2440 around PP_5719

Experiment: 3-methyl-3-butenol (pure) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (pure) 0.25 vol%
5,772,466	+		PP_5061	0.75	-0.5
5,772,467	-		PP_5061	0.75	-0.1
5,772,493	+		PP_5061	0.77	+0.6
5,772,494	-		PP_5061	0.77	+0.3
5,772,494	-		PP_5061	0.77	+0.9
5,772,494	-		PP_5061	0.77	-0.4
5,772,592	+		PP_5061	0.81	+0.2
5,772,592	+		PP_5061	0.81	+0.7
5,772,593	-		PP_5061	0.82	+0.4
5,772,622	+		PP_5061	0.83	+0.9
5,772,622	+		PP_5061	0.83	-0.2
5,772,636	-				+1.3
5,772,636	-		PP_5061	0.84	+0.1
5,772,676	+		PP_5061	0.86	-0.6
5,772,677	-		PP_5061	0.86	+0.5
5,772,725	-		PP_5061	0.88	+0.0
5,772,742	+		PP_5061	0.89	+0.2
5,772,742	+		PP_5061	0.89	-0.7
5,772,781	+				+0.3
5,772,781	+				+0.3
5,772,782	-				-1.6
5,772,782	-				-1.4
5,772,782	-				+0.5
5,772,782	-				+0.7
5,772,782	-				-0.2
5,772,782	-				+0.4
5,772,944	+				-0.8
5,772,944	+				-0.2
5,772,944	+				-0.0
5,772,945	-				-0.2
5,772,999	-				+0.4
5,773,049	+				-0.1
5,773,051	+				+0.2
5,773,051	+				+0.3
5,773,051	+				+0.2
5,773,051	+				+0.1
5,773,051	+				-0.2
5,773,085	+				+0.2
5,773,085	+				-0.2
5,773,086	-				-0.4
5,773,249	+				-0.6
5,773,250	-				+0.2
5,773,431	+				-0.7
5,773,432	-				+0.3
5,773,432	-				-0.1
5,773,453	-				+0.2
5,773,582	+		PP_5719	0.22	+0.5
5,773,624	+		PP_5719	0.28	-1.7
5,773,837	+		PP_5719	0.61	-0.5
5,773,879	+		PP_5719	0.67	-0.5
5,773,879	+		PP_5719	0.67	-1.6
5,773,880	-		PP_5719	0.67	-0.6
5,773,880	-		PP_5719	0.67	-0.0
5,773,996	+		PP_5719	0.85	-0.9
5,773,996	+		PP_5719	0.85	-1.7
5,773,997	-		PP_5719	0.85	+0.2
5,773,997	-		PP_5719	0.85	+0.4
5,774,006	+		PP_5719	0.86	-1.0
5,774,006	+		PP_5719	0.86	-1.1
5,774,006	+		PP_5719	0.86	-1.9
5,774,006	+		PP_5719	0.86	-0.2
5,774,007	-		PP_5719	0.87	-1.0
5,774,133	+				+0.1
5,774,133	+				-1.4
5,774,133	+				+0.1
5,774,134	-				+0.0
5,774,162	-				-0.1
5,774,176	+				-0.8
5,774,176	+				+1.9
5,774,176	+				+1.5
5,774,177	-				+0.7
5,774,177	-				+0.8
5,774,246	+				-1.5
5,774,425	+		PP_5063	0.20	+0.7
5,774,477	-		PP_5063	0.23	+0.1
5,774,479	+		PP_5063	0.23	+0.9
5,774,479	+		PP_5063	0.23	-1.9
5,774,479	+		PP_5063	0.23	+0.7
5,774,479	+		PP_5063	0.23	+0.5
5,774,493	-		PP_5063	0.24	-0.5
5,774,593	+		PP_5063	0.31	+0.3
5,774,594	-		PP_5063	0.31	+0.5
5,774,594	-		PP_5063	0.31	+0.4
5,774,594	-		PP_5063	0.31	-0.7
5,774,594	-		PP_5063	0.31	+0.3
5,774,971	+		PP_5063	0.57	-1.3
5,774,971	+		PP_5063	0.57	-1.1
5,774,972	-		PP_5063	0.57	+1.9