Strain Fitness in Pseudomonas putida KT2440 around PP_4328

Experiment: 3-methyl-3-butenol (pure) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (pure) 0.25 vol%
4,916,795	-				-1.5
4,917,442	+				-0.6
4,917,443	-				-1.0
4,917,452	-				-0.7
4,917,549	+				-0.8
4,917,550	-				-0.5
4,917,550	-				+0.4
4,917,593	+				+0.0
4,917,594	-				+0.8
4,917,594	-				+0.1
4,917,596	-				-0.5
4,917,617	-				-0.3
4,917,617	-				+1.2
4,917,711	+				-0.4
4,917,711	+				-0.4
4,917,711	+				-0.7
4,917,711	+				-0.2
4,917,712	-				+0.2
4,917,712	-				-0.8
4,917,712	-				-0.4
4,917,712	-				-0.5
4,917,744	+				+0.1
4,917,745	-				-0.0
4,917,783	+		PP_4328	0.12	-1.2
4,918,541	-		PP_4328	0.60	-1.1
4,918,618	-		PP_4328	0.65	-0.1
4,918,986	+		PP_4328	0.89	-0.6
4,918,987	-		PP_4328	0.89	-0.4
4,918,987	-		PP_4328	0.89	+0.0
4,918,987	-		PP_4328	0.89	+0.1
4,919,163	+				-0.4
4,919,163	+				+0.3
4,919,163	+				+0.7
4,919,195	-		PP_4329	0.12	-1.4
4,919,346	-		PP_4329	0.56	-0.8
4,919,359	+		PP_4329	0.60	-0.5
4,919,359	+		PP_4329	0.60	+0.1
4,919,495	+				+0.7
4,919,495	+				-1.0
4,919,495	+				-1.2
4,919,495	+				-2.8
4,919,495	+				+0.1
4,919,496	-				+0.3
4,919,496	-				+0.2
4,919,496	-				+0.7
4,919,496	-				+0.1
4,919,499	+				+0.1
4,919,546	+				+0.0
4,919,547	-				-0.5
4,919,555	+				-0.1
4,919,555	+				-0.2
4,919,556	-				-0.6
4,919,556	-				+0.2
4,919,602	+				-0.3
4,919,603	-				+0.7
4,919,603	-				+0.7
4,919,603	-				-0.3
4,919,606	-				-0.4
4,919,724	+				+0.2
4,919,724	+				+0.9
4,919,745	+				-0.1
4,919,745	+				+0.0
4,919,745	+				-0.3
4,919,745	+				+1.3
4,919,746	-				-1.2
4,919,746	-				+0.1
4,919,746	-				-0.7
4,919,746	-				-0.0
4,919,746	-				+0.1
4,919,746	-				+0.1
4,919,746	-				-0.3
4,919,940	+		PP_4330	0.13	-0.8
4,919,940	+		PP_4330	0.13	-1.3
4,919,940	+		PP_4330	0.13	+1.5
4,919,941	-		PP_4330	0.13	-0.2
4,919,941	-		PP_4330	0.13	-0.4
4,919,941	-		PP_4330	0.13	+0.8
4,919,941	-		PP_4330	0.13	-0.0
4,919,942	+		PP_4330	0.13	-1.2
4,919,942	+		PP_4330	0.13	-0.2
4,919,942	+		PP_4330	0.13	-0.8
4,919,976	+		PP_4330	0.14	-0.3
4,919,977	-		PP_4330	0.14	-0.5
4,920,075	+		PP_4330	0.18	-0.1