Strain Fitness in Pseudomonas putida KT2440 around PP_4197

Experiment: 3-methyl-3-butenol (pure) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (pure) 0.25 vol%
4,741,464	+				+0.8
4,741,465	-				-0.7
4,741,465	-				+0.1
4,741,465	-				-1.4
4,741,465	-				+1.7
4,741,465	-				+1.0
4,741,489	+				-0.4
4,741,489	+				-0.4
4,741,489	+				-0.3
4,741,490	-				+0.8
4,741,775	-				-0.1
4,741,829	+				+0.9
4,741,830	-				-0.1
4,741,986	+		PP_4196	0.20	+0.3
4,741,987	-		PP_4196	0.20	-0.9
4,741,987	-		PP_4196	0.20	-0.8
4,742,006	+		PP_4196	0.24	-1.6
4,742,366	+				+0.3
4,742,400	+				+0.6
4,742,400	+				-0.8
4,742,401	-				-0.1
4,742,480	-				+0.1
4,742,489	+				-1.1
4,742,490	-				-2.6
4,742,490	-				+0.6
4,742,541	-				-0.0
4,742,729	+		PP_4197	0.21	-0.3
4,742,729	+		PP_4197	0.21	+0.4
4,742,729	+		PP_4197	0.21	+0.0
4,742,729	+		PP_4197	0.21	-0.1
4,742,730	-		PP_4197	0.21	-2.2
4,742,770	-		PP_4197	0.23	-0.4
4,742,797	+		PP_4197	0.25	-0.9
4,742,797	+		PP_4197	0.25	-0.7
4,742,815	+		PP_4197	0.26	-0.6
4,742,914	-		PP_4197	0.32	+0.4
4,742,914	-		PP_4197	0.32	-1.1
4,742,914	-		PP_4197	0.32	-0.3
4,742,985	+		PP_4197	0.37	-1.1
4,742,985	+		PP_4197	0.37	-0.5
4,742,985	+		PP_4197	0.37	-0.7
4,742,985	+		PP_4197	0.37	+0.3
4,742,985	+				+1.4
4,742,986	-		PP_4197	0.37	+0.6
4,742,986	-		PP_4197	0.37	-0.9
4,742,986	-				+0.4
4,743,154	+		PP_4197	0.47	-0.7
4,743,225	+		PP_4197	0.52	-1.7
4,743,226	-		PP_4197	0.52	+0.7
4,743,226	-		PP_4197	0.52	-1.5
4,743,226	-		PP_4197	0.52	+0.2
4,743,228	+		PP_4197	0.52	-0.7
4,743,228	+		PP_4197	0.52	+0.5
4,743,228	+		PP_4197	0.52	-0.6
4,743,229	-		PP_4197	0.52	-0.7
4,743,363	-		PP_4197	0.61	-0.1
4,743,363	-		PP_4197	0.61	+0.2
4,743,408	+		PP_4197	0.63	-0.9
4,743,408	+		PP_4197	0.63	-0.2
4,743,408	+				-0.1
4,743,409	-		PP_4197	0.63	-1.0
4,743,639	+		PP_4197	0.78	-1.8
4,743,640	-		PP_4197	0.78	-0.8
4,743,640	-		PP_4197	0.78	+0.8
4,743,693	+		PP_4197	0.81	-1.2
4,743,693	+		PP_4197	0.81	-0.1
4,743,693	+		PP_4197	0.81	-0.6
4,743,694	-		PP_4197	0.81	+0.1
4,743,774	+		PP_4197	0.86	-1.0
4,743,791	-		PP_4197	0.87	-2.0
4,743,814	+		PP_4197	0.89	-0.5
4,743,822	+				+1.4
4,743,822	+		PP_4197	0.89	+0.3
4,743,864	+				-2.1
4,743,864	+				-0.4
4,743,865	-				+1.4
4,743,929	-				-0.3
4,743,929	-				+0.3
4,743,938	+				-0.9
4,743,938	+				-1.7
4,743,938	+				+0.1
4,743,939	-				-0.0
4,743,939	-				+0.6
4,743,968	-				-0.2
4,744,006	-				+0.3
4,744,006	-				-0.1
4,744,053	-				+1.1
4,744,053	-				+0.4
4,744,053	-				+0.1
4,744,234	+		PP_4198	0.27	+1.4
4,744,234	+		PP_4198	0.27	-0.1
4,744,235	-		PP_4198	0.27	+0.7
4,744,244	-		PP_4198	0.28	+0.8
4,744,244	-		PP_4198	0.28	+0.6
4,744,245	+		PP_4198	0.29	-0.7
4,744,255	+		PP_4198	0.30	-0.1
4,744,256	-		PP_4198	0.30	+0.3
4,744,256	-		PP_4198	0.30	+0.7
4,744,563	+		PP_4198	0.68	-0.4
4,744,578	+		PP_4198	0.69	+0.6
4,744,578	+		PP_4198	0.69	+0.4
4,744,578	+		PP_4198	0.69	-1.7
4,744,584	+		PP_4198	0.70	-0.4
4,744,584	+		PP_4198	0.70	-0.6
4,744,584	+		PP_4198	0.70	-0.8
4,744,584	+		PP_4198	0.70	+0.0
4,744,585	-		PP_4198	0.70	+0.4
4,744,585	-		PP_4198	0.70	+0.1
4,744,981	-		PP_4199	0.45	+0.0