Strain Fitness in Pseudomonas putida KT2440 around PP_2311

Experiment: 3-methyl-3-butenol (pure) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (pure) 0.25 vol%
2,639,788	-		PP_2310	0.41	+0.0
2,639,943	+		PP_2310	0.52	+0.2
2,640,029	-		PP_2310	0.58	+0.9
2,640,088	-		PP_2310	0.62	+0.1
2,640,232	+		PP_2310	0.71	-0.8
2,640,315	+		PP_2310	0.77	-0.3
2,640,316	-		PP_2310	0.77	+0.3
2,640,316	-		PP_2310	0.77	-0.3
2,640,316	-		PP_2310	0.77	-0.0
2,640,316	-		PP_2310	0.77	-1.3
2,640,416	-		PP_2310	0.84	-1.4
2,640,565	+				+0.2
2,640,565	+				-0.6
2,640,623	-				-0.9
2,640,623	-				-0.2
2,640,641	+				-0.1
2,640,641	+				-0.1
2,640,642	-				+0.8
2,640,743	+				-0.0
2,640,822	-				+1.4
2,640,947	-		PP_2311	0.21	-0.6
2,640,968	+		PP_2311	0.23	-0.5
2,640,968	+		PP_2311	0.23	+0.1
2,640,969	-		PP_2311	0.23	-0.1
2,641,073	-		PP_2311	0.36	-0.7
2,641,297	-		PP_2311	0.64	-1.2
2,641,587	-				-0.9
2,641,829	+				-0.6
2,641,877	+				+1.1
2,641,949	-		PP_2312	0.15	+0.8
2,641,949	-				+2.0
2,641,949	-		PP_2312	0.15	+0.1
2,642,016	-		PP_2312	0.20	+0.5
2,642,142	-		PP_2312	0.29	-0.1
2,642,360	+		PP_2312	0.44	+0.6
2,642,360	+		PP_2312	0.44	+1.5
2,642,361	-		PP_2312	0.44	-0.6
2,642,361	-		PP_2312	0.44	+1.2
2,642,361	-		PP_2312	0.44	-0.3
2,642,361	-		PP_2312	0.44	+0.1
2,642,374	+		PP_2312	0.45	+0.0
2,642,374	+		PP_2312	0.45	-0.3
2,642,374	+		PP_2312	0.45	+0.1
2,642,375	-		PP_2312	0.45	-0.4
2,642,375	-		PP_2312	0.45	+0.4
2,642,375	-		PP_2312	0.45	+0.0
2,642,485	+		PP_2312	0.53	+0.9
2,642,485	+		PP_2312	0.53	-0.0
2,642,485	+		PP_2312	0.53	+0.2
2,642,486	-		PP_2312	0.53	+0.3
2,642,486	-		PP_2312	0.53	+0.1
2,642,489	+		PP_2312	0.53	-0.2
2,642,490	-		PP_2312	0.53	-0.5
2,642,490	-		PP_2312	0.53	-0.6
2,642,490	-		PP_2312	0.53	-1.5