Strain Fitness in Pseudomonas putida KT2440 around PP_2181

Experiment: 3-methyl-3-butenol (pure) 0.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-butenol (pure) 0.25 vol%
2,485,968	-		PP_2180	0.41	+0.9
2,486,129	+		PP_2180	0.53	-0.7
2,486,129	+		PP_2180	0.53	+0.5
2,486,130	-		PP_2180	0.53	-1.4
2,486,130	-		PP_2180	0.53	+0.4
2,486,130	-		PP_2180	0.53	-0.6
2,486,163	-		PP_2180	0.55	-1.7
2,486,209	+		PP_2180	0.59	+0.6
2,486,234	+		PP_2180	0.61	-1.0
2,486,238	-		PP_2180	0.61	+0.5
2,486,238	-		PP_2180	0.61	+0.6
2,486,288	+		PP_2180	0.65	-0.6
2,486,288	+		PP_2180	0.65	+1.0
2,486,289	-		PP_2180	0.65	-1.3
2,486,289	-		PP_2180	0.65	-0.2
2,486,372	+		PP_2180	0.71	-0.8
2,486,458	+		PP_2180	0.77	+1.1
2,486,471	+		PP_2180	0.78	+0.3
2,486,471	+		PP_2180	0.78	-0.4
2,486,472	-		PP_2180	0.78	-2.4
2,486,750	+				-0.3
2,486,750	+				+0.8
2,486,750	+				-0.5
2,486,750	+				-0.1
2,486,751	-				+0.5
2,486,751	-				-0.3
2,486,751	-				+0.3
2,486,751	-				-0.5
2,486,784	+				-0.3
2,486,849	+				+0.3
2,486,985	+				+0.7
2,487,149	+		PP_2181	0.36	-0.4
2,487,150	-		PP_2181	0.36	-0.2
2,487,150	-		PP_2181	0.36	-1.6
2,487,150	-		PP_2181	0.36	-0.8
2,487,156	-		PP_2181	0.37	-1.3
2,487,156	-		PP_2181	0.37	-0.4
2,487,323	+		PP_2181	0.67	-1.5
2,487,646	-				+0.5
2,487,646	-				+0.4
2,487,646	-				+0.2
2,487,646	-				-0.2
2,487,655	-				+0.3
2,488,167	-				+0.7
2,488,354	+				+0.6
2,488,354	+				+1.3
2,488,354	+				+0.1
2,488,354	+				-1.8
2,488,355	-				+0.3
2,488,355	-				-0.6
2,488,355	-				-0.3
2,488,371	-				-0.2
2,488,371	-				+0.9
2,488,385	-				+0.1
2,488,385	-				+1.8
2,488,505	+				+0.2