Experiment: 3-methyl-3-butenol (pure) 0.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0151 and PP_0152 are separated by 89 nucleotides PP_0152 and PP_0153 are separated by 245 nucleotides PP_0153 and PP_0154 are separated by 373 nucleotides
PP_0151: PP_0151 - conserved exported protein of unknown function, at 160,742 to 161,035
_0151
PP_0152: PP_0152 - conserved exported protein of unknown function, at 161,125 to 161,505
_0152
PP_0153: PP_0153 - hypothetical protein, at 161,751 to 161,966
_0153
PP_0154: PP_0154 - Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) <small>(from data)</small>, at 162,340 to 163,833
_0154
Position (kb) 161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 160.808 kb on + strand, within PP_0151 at 160.809 kb on - strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.941 kb on + strand, within PP_0151 at 160.942 kb on - strand, within PP_0151 at 161.029 kb on - strand at 161.351 kb on - strand, within PP_0152 at 161.433 kb on + strand, within PP_0152 at 161.434 kb on - strand, within PP_0152 at 161.481 kb on - strand at 161.529 kb on + strand at 161.568 kb on + strand at 161.858 kb on + strand, within PP_0153 at 161.858 kb on + strand, within PP_0153 at 161.859 kb on - strand, within PP_0153 at 161.957 kb on + strand at 161.958 kb on - strand at 161.958 kb on - strand at 161.997 kb on + strand at 161.998 kb on - strand at 162.001 kb on + strand at 162.001 kb on + strand at 162.002 kb on - strand at 162.049 kb on - strand at 162.052 kb on + strand at 162.053 kb on - strand at 162.082 kb on + strand at 162.207 kb on - strand at 162.241 kb on - strand at 162.246 kb on + strand at 162.246 kb on + strand at 162.246 kb on + strand at 162.247 kb on - strand at 162.264 kb on - strand at 162.447 kb on - strand at 162.468 kb on - strand at 162.747 kb on - strand, within PP_0154 at 162.751 kb on - strand, within PP_0154 at 162.751 kb on - strand, within PP_0154 at 162.751 kb on - strand, within PP_0154 at 162.774 kb on + strand, within PP_0154 at 162.796 kb on + strand, within PP_0154 at 162.797 kb on - strand, within PP_0154 at 162.797 kb on - strand, within PP_0154 at 162.851 kb on + strand, within PP_0154 at 162.852 kb on - strand, within PP_0154 at 162.852 kb on - strand, within PP_0154 at 162.852 kb on - strand, within PP_0154 at 162.924 kb on + strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-3-butenol (pure) 0.25 vol% remove 160,808 + PP_0151 0.22 +1.1 160,809 - PP_0151 0.23 -1.6 160,894 + PP_0151 0.52 +0.2 160,894 + PP_0151 0.52 -1.0 160,894 + PP_0151 0.52 -1.1 160,941 + PP_0151 0.68 +0.3 160,942 - PP_0151 0.68 -0.1 161,029 - +0.8 161,351 - PP_0152 0.59 +0.1 161,433 + PP_0152 0.81 -0.1 161,434 - PP_0152 0.81 -0.6 161,481 - -0.3 161,529 + -0.2 161,568 + +0.4 161,858 + PP_0153 0.50 +0.0 161,858 + PP_0153 0.50 -0.5 161,859 - PP_0153 0.50 -0.7 161,957 + +0.2 161,958 - +1.3 161,958 - -1.3 161,997 + +0.1 161,998 - -0.7 162,001 + -0.9 162,001 + +0.1 162,002 - +0.6 162,049 - -0.0 162,052 + -0.9 162,053 - -0.1 162,082 + -1.3 162,207 - +0.5 162,241 - +0.1 162,246 + -0.0 162,246 + -0.1 162,246 + +0.1 162,247 - +0.7 162,264 - -0.8 162,447 - -0.6 162,468 - +0.1 162,747 - PP_0154 0.27 -0.9 162,751 - PP_0154 0.28 +0.2 162,751 - PP_0154 0.28 -3.2 162,751 - PP_0154 0.28 -0.2 162,774 + PP_0154 0.29 +0.1 162,796 + PP_0154 0.31 +1.6 162,797 - PP_0154 0.31 -0.3 162,797 - PP_0154 0.31 +0.4 162,851 + PP_0154 0.34 +0.0 162,852 - PP_0154 0.34 +0.7 162,852 - PP_0154 0.34 +0.3 162,852 - PP_0154 0.34 -0.4 162,924 + PP_0154 0.39 +0.2 162,925 - PP_0154 0.39 -1.0 162,925 - PP_0154 0.39 +0.9 162,925 - PP_0154 0.39 +0.1 162,925 - PP_0154 0.39 -0.1 162,925 - PP_0154 0.39 -0.7 162,925 - PP_0154 0.39 +0.3 162,925 - PP_0154 0.39 -0.1
Or see this region's nucleotide sequence