Strain Fitness in Pseudomonas putida KT2440 around PP_0128

Experiment: 3-methyl-3-butenol (pure) 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0126 and PP_0127 are separated by 151 nucleotidesPP_0127 and PP_0128 are separated by 12 nucleotidesPP_0128 and PP_0129 are separated by 27 nucleotides PP_0126: PP_0126 - Cytochrome c4, at 131,809 to 132,426 _0126 PP_0127: PP_0127 - Thiol:disulfide interchange protein, at 132,578 to 133,210 _0127 PP_0128: PP_0128 - conserved protein of unknown function, at 133,223 to 134,077 _0128 PP_0129: PP_0129 - GGDEF domain protein, at 134,105 to 136,042 _0129 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 132.286 kb on + strand, within PP_0126at 132.406 kb on + strandat 132.406 kb on + strandat 132.407 kb on - strandat 132.424 kb on + strandat 132.443 kb on + strandat 132.443 kb on + strandat 132.444 kb on - strandat 132.444 kb on - strandat 132.444 kb on - strandat 132.444 kb on - strandat 132.502 kb on - strandat 132.502 kb on - strandat 132.502 kb on - strandat 132.502 kb on - strandat 132.572 kb on + strandat 132.572 kb on + strandat 132.572 kb on + strandat 132.573 kb on - strandat 132.583 kb on + strandat 132.584 kb on - strandat 132.584 kb on - strandat 132.584 kb on - strandat 132.671 kb on + strand, within PP_0127at 132.671 kb on + strand, within PP_0127at 132.672 kb on - strand, within PP_0127at 132.672 kb on - strand, within PP_0127at 132.672 kb on - strand, within PP_0127at 132.740 kb on + strand, within PP_0127at 133.080 kb on - strand, within PP_0127at 133.080 kb on - strand, within PP_0127at 133.096 kb on - strand, within PP_0127at 133.122 kb on - strand, within PP_0127at 133.208 kb on + strandat 133.208 kb on + strandat 133.208 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.241 kb on - strandat 133.387 kb on + strand, within PP_0128at 133.387 kb on + strand, within PP_0128at 133.388 kb on - strand, within PP_0128at 133.511 kb on + strand, within PP_0128at 133.512 kb on - strand, within PP_0128at 133.562 kb on + strand, within PP_0128at 133.562 kb on + strand, within PP_0128at 133.563 kb on - strand, within PP_0128at 133.720 kb on - strand, within PP_0128at 133.775 kb on + strand, within PP_0128at 133.775 kb on + strand, within PP_0128at 133.775 kb on + strand, within PP_0128at 133.776 kb on - strand, within PP_0128at 133.777 kb on + strand, within PP_0128at 133.778 kb on - strand, within PP_0128at 133.800 kb on - strand, within PP_0128at 133.942 kb on + strand, within PP_0128at 133.942 kb on + strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 134.056 kb on + strandat 134.056 kb on + strandat 134.056 kb on + strandat 134.075 kb on + strandat 134.076 kb on - strandat 134.076 kb on - strandat 134.139 kb on - strandat 134.143 kb on + strandat 134.143 kb on + strandat 134.449 kb on + strand, within PP_0129at 134.688 kb on + strand, within PP_0129at 134.688 kb on + strand, within PP_0129at 134.689 kb on - strand, within PP_0129at 134.689 kb on - strand, within PP_0129at 134.742 kb on + strand, within PP_0129at 134.743 kb on - strand, within PP_0129at 134.932 kb on - strand, within PP_0129at 134.932 kb on - strand, within PP_0129at 134.969 kb on + strand, within PP_0129at 134.969 kb on + strand, within PP_0129at 134.969 kb on + strand, within PP_0129at 134.970 kb on - strandat 134.970 kb on - strand, within PP_0129at 134.970 kb on - strand, within PP_0129at 134.981 kb on + strand, within PP_0129at 134.981 kb on + strand, within PP_0129at 134.982 kb on - strand, within PP_0129at 134.999 kb on + strand, within PP_0129at 135.000 kb on - strand, within PP_0129at 135.000 kb on - strand, within PP_0129at 135.000 kb on - strand, within PP_0129

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-butenol (pure) 0.25 vol%
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132,286 + PP_0126 0.77 +1.2
132,406 + -0.9
132,406 + -0.6
132,407 - +0.4
132,424 + -1.6
132,443 + -0.5
132,443 + +0.1
132,444 - -0.4
132,444 - +0.6
132,444 - +0.2
132,444 - +0.2
132,502 - +1.1
132,502 - -0.1
132,502 - -0.2
132,502 - +0.9
132,572 + -0.4
132,572 + +0.0
132,572 + -1.4
132,573 - +1.7
132,583 + -0.2
132,584 - +1.9
132,584 - +1.4
132,584 - -0.9
132,671 + PP_0127 0.15 +1.1
132,671 + PP_0127 0.15 +0.2
132,672 - PP_0127 0.15 +1.2
132,672 - PP_0127 0.15 -1.1
132,672 - PP_0127 0.15 +0.8
132,740 + PP_0127 0.26 -1.4
133,080 - PP_0127 0.79 -0.1
133,080 - PP_0127 0.79 +0.1
133,096 - PP_0127 0.82 +1.1
133,122 - PP_0127 0.86 +1.9
133,208 + +0.7
133,208 + +1.5
133,208 + -0.2
133,240 + +0.4
133,240 + +1.1
133,240 + +1.4
133,240 + +1.0
133,240 + +0.6
133,241 - +0.6
133,387 + PP_0128 0.19 +0.5
133,387 + PP_0128 0.19 +0.7
133,388 - PP_0128 0.19 +1.2
133,511 + PP_0128 0.34 +0.0
133,512 - PP_0128 0.34 +0.7
133,562 + PP_0128 0.40 +0.9
133,562 + PP_0128 0.40 +1.0
133,563 - PP_0128 0.40 +0.4
133,720 - PP_0128 0.58 +0.8
133,775 + PP_0128 0.65 +0.7
133,775 + PP_0128 0.65 +1.0
133,775 + PP_0128 0.65 +0.9
133,776 - PP_0128 0.65 +0.7
133,777 + PP_0128 0.65 +0.6
133,778 - PP_0128 0.65 +0.9
133,800 - PP_0128 0.67 +0.6
133,942 + PP_0128 0.84 +0.4
133,942 + PP_0128 0.84 +2.0
133,943 - PP_0128 0.84 +0.4
133,943 - PP_0128 0.84 +1.6
133,943 - PP_0128 0.84 +1.1
133,943 - PP_0128 0.84 +1.7
134,056 + -0.0
134,056 + +0.1
134,056 + +0.1
134,075 + +0.5
134,076 - +0.7
134,076 - +0.3
134,139 - -0.6
134,143 + +0.2
134,143 + -0.5
134,449 + PP_0129 0.18 -0.1
134,688 + PP_0129 0.30 -0.1
134,688 + PP_0129 0.30 -0.1
134,689 - PP_0129 0.30 -1.3
134,689 - PP_0129 0.30 -0.4
134,742 + PP_0129 0.33 +0.6
134,743 - PP_0129 0.33 -0.2
134,932 - PP_0129 0.43 -1.8
134,932 - PP_0129 0.43 +0.5
134,969 + PP_0129 0.45 +0.6
134,969 + PP_0129 0.45 +0.5
134,969 + PP_0129 0.45 -0.2
134,970 - -0.9
134,970 - PP_0129 0.45 -0.6
134,970 - PP_0129 0.45 +0.7
134,981 + PP_0129 0.45 -0.4
134,981 + PP_0129 0.45 +0.1
134,982 - PP_0129 0.45 +1.1
134,999 + PP_0129 0.46 -0.8
135,000 - PP_0129 0.46 -0.5
135,000 - PP_0129 0.46 -1.0
135,000 - PP_0129 0.46 +1.3

Or see this region's nucleotide sequence