Experiment: Maltitol 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3679 and Echvi_3680 are separated by 279 nucleotides Echvi_3680 and Echvi_3681 overlap by 4 nucleotides Echvi_3681 and Echvi_3682 are separated by 72 nucleotides Echvi_3682 and Echvi_3683 are separated by 57 nucleotides
Echvi_3679: Echvi_3679 - Acetyltransferase (isoleucine patch superfamily), at 4,383,590 to 4,384,159
_3679
Echvi_3680: Echvi_3680 - Predicted transcriptional regulators, at 4,384,439 to 4,384,765
_3680
Echvi_3681: Echvi_3681 - Uncharacterized conserved protein, at 4,384,762 to 4,385,265
_3681
Echvi_3682: Echvi_3682 - Uncharacterized protein conserved in bacteria, at 4,385,338 to 4,385,817
_3682
Echvi_3683: Echvi_3683 - gliding motility-associated protein GldC, at 4,385,875 to 4,386,216
_3683
Position (kb)
4384
4385
4386 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4383.786 kb on - strand, within Echvi_3679 at 4383.786 kb on - strand, within Echvi_3679 at 4383.796 kb on + strand, within Echvi_3679 at 4383.796 kb on + strand, within Echvi_3679 at 4383.797 kb on - strand, within Echvi_3679 at 4383.838 kb on + strand, within Echvi_3679 at 4383.838 kb on + strand, within Echvi_3679 at 4383.898 kb on + strand, within Echvi_3679 at 4383.898 kb on + strand, within Echvi_3679 at 4383.898 kb on + strand, within Echvi_3679 at 4383.899 kb on - strand, within Echvi_3679 at 4383.899 kb on - strand, within Echvi_3679 at 4383.899 kb on - strand, within Echvi_3679 at 4383.899 kb on - strand, within Echvi_3679 at 4383.903 kb on - strand, within Echvi_3679 at 4383.903 kb on - strand, within Echvi_3679 at 4383.904 kb on + strand, within Echvi_3679 at 4383.905 kb on - strand, within Echvi_3679 at 4384.041 kb on + strand, within Echvi_3679 at 4384.042 kb on - strand, within Echvi_3679 at 4384.148 kb on + strand at 4384.148 kb on + strand at 4384.148 kb on + strand at 4384.157 kb on + strand at 4384.158 kb on - strand at 4384.160 kb on + strand at 4384.160 kb on + strand at 4384.160 kb on + strand at 4384.214 kb on - strand at 4384.214 kb on - strand at 4384.214 kb on - strand at 4384.327 kb on - strand at 4384.346 kb on - strand at 4384.346 kb on - strand at 4384.403 kb on - strand at 4384.435 kb on + strand at 4384.495 kb on - strand, within Echvi_3680 at 4384.648 kb on - strand, within Echvi_3680 at 4384.648 kb on - strand, within Echvi_3680 at 4384.648 kb on - strand, within Echvi_3680 at 4384.648 kb on - strand, within Echvi_3680 at 4384.648 kb on - strand, within Echvi_3680 at 4384.734 kb on + strand at 4384.734 kb on + strand at 4384.734 kb on + strand at 4384.735 kb on - strand at 4384.735 kb on - strand at 4384.735 kb on - strand at 4384.735 kb on - strand at 4384.738 kb on - strand at 4384.822 kb on - strand, within Echvi_3681 at 4384.867 kb on - strand, within Echvi_3681 at 4385.035 kb on + strand, within Echvi_3681 at 4385.035 kb on + strand, within Echvi_3681 at 4385.036 kb on - strand, within Echvi_3681 at 4385.038 kb on - strand, within Echvi_3681 at 4385.038 kb on - strand, within Echvi_3681 at 4385.158 kb on + strand, within Echvi_3681 at 4385.159 kb on - strand, within Echvi_3681 at 4385.311 kb on + strand at 4385.404 kb on + strand, within Echvi_3682 at 4385.444 kb on + strand, within Echvi_3682 at 4385.445 kb on - strand, within Echvi_3682 at 4385.468 kb on + strand, within Echvi_3682 at 4385.468 kb on + strand, within Echvi_3682 at 4385.469 kb on - strand, within Echvi_3682 at 4385.501 kb on + strand, within Echvi_3682 at 4385.502 kb on - strand, within Echvi_3682 at 4385.630 kb on + strand, within Echvi_3682 at 4385.657 kb on - strand, within Echvi_3682 at 4385.695 kb on + strand, within Echvi_3682 at 4385.755 kb on + strand, within Echvi_3682 at 4385.762 kb on - strand, within Echvi_3682 at 4385.768 kb on + strand, within Echvi_3682 at 4385.768 kb on + strand, within Echvi_3682 at 4385.808 kb on + strand at 4385.810 kb on + strand at 4386.054 kb on + strand, within Echvi_3683 at 4386.054 kb on + strand, within Echvi_3683 at 4386.055 kb on - strand, within Echvi_3683 at 4386.055 kb on - strand, within Echvi_3683 at 4386.120 kb on + strand, within Echvi_3683 at 4386.121 kb on - strand, within Echvi_3683 at 4386.139 kb on + strand, within Echvi_3683 at 4386.140 kb on - strand, within Echvi_3683 at 4386.140 kb on - strand, within Echvi_3683 at 4386.180 kb on - strand, within Echvi_3683
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol 20mM (C) remove 4,383,786 - Echvi_3679 0.34 +0.8 4,383,786 - Echvi_3679 0.34 +0.4 4,383,796 + Echvi_3679 0.36 +0.0 4,383,796 + Echvi_3679 0.36 +0.8 4,383,797 - Echvi_3679 0.36 +0.8 4,383,838 + Echvi_3679 0.44 +0.2 4,383,838 + Echvi_3679 0.44 -1.6 4,383,898 + Echvi_3679 0.54 -0.2 4,383,898 + Echvi_3679 0.54 +0.2 4,383,898 + Echvi_3679 0.54 -1.0 4,383,899 - Echvi_3679 0.54 -0.4 4,383,899 - Echvi_3679 0.54 +0.2 4,383,899 - Echvi_3679 0.54 -0.7 4,383,899 - Echvi_3679 0.54 -1.3 4,383,903 - Echvi_3679 0.55 +0.8 4,383,903 - Echvi_3679 0.55 +0.8 4,383,904 + Echvi_3679 0.55 -0.7 4,383,905 - Echvi_3679 0.55 -0.3 4,384,041 + Echvi_3679 0.79 +0.1 4,384,042 - Echvi_3679 0.79 -1.9 4,384,148 + -0.1 4,384,148 + -0.1 4,384,148 + -1.7 4,384,157 + +0.0 4,384,158 - -1.1 4,384,160 + -0.0 4,384,160 + +0.8 4,384,160 + +0.0 4,384,214 - -0.2 4,384,214 - -0.3 4,384,214 - -1.6 4,384,327 - +0.3 4,384,346 - -1.0 4,384,346 - +0.1 4,384,403 - -0.6 4,384,435 + -2.3 4,384,495 - Echvi_3680 0.17 +0.3 4,384,648 - Echvi_3680 0.64 -0.3 4,384,648 - Echvi_3680 0.64 -0.8 4,384,648 - Echvi_3680 0.64 -0.2 4,384,648 - Echvi_3680 0.64 +0.3 4,384,648 - Echvi_3680 0.64 -0.4 4,384,734 + -0.2 4,384,734 + +0.9 4,384,734 + -0.5 4,384,735 - -0.1 4,384,735 - +1.5 4,384,735 - -0.4 4,384,735 - -1.9 4,384,738 - -0.4 4,384,822 - Echvi_3681 0.12 +0.7 4,384,867 - Echvi_3681 0.21 +0.6 4,385,035 + Echvi_3681 0.54 -1.7 4,385,035 + Echvi_3681 0.54 +0.6 4,385,036 - Echvi_3681 0.54 -0.3 4,385,038 - Echvi_3681 0.55 +1.0 4,385,038 - Echvi_3681 0.55 +0.3 4,385,158 + Echvi_3681 0.79 +1.5 4,385,159 - Echvi_3681 0.79 +1.2 4,385,311 + +0.7 4,385,404 + Echvi_3682 0.14 -0.9 4,385,444 + Echvi_3682 0.22 +1.6 4,385,445 - Echvi_3682 0.22 +1.1 4,385,468 + Echvi_3682 0.27 -0.6 4,385,468 + Echvi_3682 0.27 +0.6 4,385,469 - Echvi_3682 0.27 -1.8 4,385,501 + Echvi_3682 0.34 -0.8 4,385,502 - Echvi_3682 0.34 +0.1 4,385,630 + Echvi_3682 0.61 -1.0 4,385,657 - Echvi_3682 0.66 -0.6 4,385,695 + Echvi_3682 0.74 -0.5 4,385,755 + Echvi_3682 0.87 +0.9 4,385,762 - Echvi_3682 0.88 -1.4 4,385,768 + Echvi_3682 0.90 -0.4 4,385,768 + Echvi_3682 0.90 -0.6 4,385,808 + -0.6 4,385,810 + -0.4 4,386,054 + Echvi_3683 0.52 -1.1 4,386,054 + Echvi_3683 0.52 -0.7 4,386,055 - Echvi_3683 0.53 +0.9 4,386,055 - Echvi_3683 0.53 -2.5 4,386,120 + Echvi_3683 0.72 +1.3 4,386,121 - Echvi_3683 0.72 +2.9 4,386,139 + Echvi_3683 0.77 -0.4 4,386,140 - Echvi_3683 0.77 -1.8 4,386,140 - Echvi_3683 0.77 -0.1 4,386,180 - Echvi_3683 0.89 +1.3
Or see this region's nucleotide sequence