Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3681

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3679 and Echvi_3680 are separated by 279 nucleotidesEchvi_3680 and Echvi_3681 overlap by 4 nucleotidesEchvi_3681 and Echvi_3682 are separated by 72 nucleotidesEchvi_3682 and Echvi_3683 are separated by 57 nucleotides Echvi_3679: Echvi_3679 - Acetyltransferase (isoleucine patch superfamily), at 4,383,590 to 4,384,159 _3679 Echvi_3680: Echvi_3680 - Predicted transcriptional regulators, at 4,384,439 to 4,384,765 _3680 Echvi_3681: Echvi_3681 - Uncharacterized conserved protein, at 4,384,762 to 4,385,265 _3681 Echvi_3682: Echvi_3682 - Uncharacterized protein conserved in bacteria, at 4,385,338 to 4,385,817 _3682 Echvi_3683: Echvi_3683 - gliding motility-associated protein GldC, at 4,385,875 to 4,386,216 _3683 Position (kb) 4384 4385 4386Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4383.786 kb on - strand, within Echvi_3679at 4383.786 kb on - strand, within Echvi_3679at 4383.796 kb on + strand, within Echvi_3679at 4383.796 kb on + strand, within Echvi_3679at 4383.797 kb on - strand, within Echvi_3679at 4383.838 kb on + strand, within Echvi_3679at 4383.838 kb on + strand, within Echvi_3679at 4383.898 kb on + strand, within Echvi_3679at 4383.898 kb on + strand, within Echvi_3679at 4383.898 kb on + strand, within Echvi_3679at 4383.899 kb on - strand, within Echvi_3679at 4383.899 kb on - strand, within Echvi_3679at 4383.899 kb on - strand, within Echvi_3679at 4383.899 kb on - strand, within Echvi_3679at 4383.903 kb on - strand, within Echvi_3679at 4383.903 kb on - strand, within Echvi_3679at 4383.904 kb on + strand, within Echvi_3679at 4383.905 kb on - strand, within Echvi_3679at 4384.041 kb on + strand, within Echvi_3679at 4384.042 kb on - strand, within Echvi_3679at 4384.148 kb on + strandat 4384.148 kb on + strandat 4384.148 kb on + strandat 4384.157 kb on + strandat 4384.158 kb on - strandat 4384.160 kb on + strandat 4384.160 kb on + strandat 4384.160 kb on + strandat 4384.214 kb on - strandat 4384.214 kb on - strandat 4384.214 kb on - strandat 4384.327 kb on - strandat 4384.346 kb on - strandat 4384.346 kb on - strandat 4384.403 kb on - strandat 4384.435 kb on + strandat 4384.495 kb on - strand, within Echvi_3680at 4384.648 kb on - strand, within Echvi_3680at 4384.648 kb on - strand, within Echvi_3680at 4384.648 kb on - strand, within Echvi_3680at 4384.648 kb on - strand, within Echvi_3680at 4384.648 kb on - strand, within Echvi_3680at 4384.734 kb on + strandat 4384.734 kb on + strandat 4384.734 kb on + strandat 4384.735 kb on - strandat 4384.735 kb on - strandat 4384.735 kb on - strandat 4384.735 kb on - strandat 4384.738 kb on - strandat 4384.822 kb on - strand, within Echvi_3681at 4384.867 kb on - strand, within Echvi_3681at 4385.035 kb on + strand, within Echvi_3681at 4385.035 kb on + strand, within Echvi_3681at 4385.036 kb on - strand, within Echvi_3681at 4385.038 kb on - strand, within Echvi_3681at 4385.038 kb on - strand, within Echvi_3681at 4385.158 kb on + strand, within Echvi_3681at 4385.159 kb on - strand, within Echvi_3681at 4385.311 kb on + strandat 4385.404 kb on + strand, within Echvi_3682at 4385.444 kb on + strand, within Echvi_3682at 4385.445 kb on - strand, within Echvi_3682at 4385.468 kb on + strand, within Echvi_3682at 4385.468 kb on + strand, within Echvi_3682at 4385.469 kb on - strand, within Echvi_3682at 4385.501 kb on + strand, within Echvi_3682at 4385.502 kb on - strand, within Echvi_3682at 4385.630 kb on + strand, within Echvi_3682at 4385.657 kb on - strand, within Echvi_3682at 4385.695 kb on + strand, within Echvi_3682at 4385.755 kb on + strand, within Echvi_3682at 4385.762 kb on - strand, within Echvi_3682at 4385.768 kb on + strand, within Echvi_3682at 4385.768 kb on + strand, within Echvi_3682at 4385.808 kb on + strandat 4385.810 kb on + strandat 4386.054 kb on + strand, within Echvi_3683at 4386.054 kb on + strand, within Echvi_3683at 4386.055 kb on - strand, within Echvi_3683at 4386.055 kb on - strand, within Echvi_3683at 4386.120 kb on + strand, within Echvi_3683at 4386.121 kb on - strand, within Echvi_3683at 4386.139 kb on + strand, within Echvi_3683at 4386.140 kb on - strand, within Echvi_3683at 4386.140 kb on - strand, within Echvi_3683at 4386.180 kb on - strand, within Echvi_3683

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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4,383,786 - Echvi_3679 0.34 +0.8
4,383,786 - Echvi_3679 0.34 +0.4
4,383,796 + Echvi_3679 0.36 +0.0
4,383,796 + Echvi_3679 0.36 +0.8
4,383,797 - Echvi_3679 0.36 +0.8
4,383,838 + Echvi_3679 0.44 +0.2
4,383,838 + Echvi_3679 0.44 -1.6
4,383,898 + Echvi_3679 0.54 -0.2
4,383,898 + Echvi_3679 0.54 +0.2
4,383,898 + Echvi_3679 0.54 -1.0
4,383,899 - Echvi_3679 0.54 -0.4
4,383,899 - Echvi_3679 0.54 +0.2
4,383,899 - Echvi_3679 0.54 -0.7
4,383,899 - Echvi_3679 0.54 -1.3
4,383,903 - Echvi_3679 0.55 +0.8
4,383,903 - Echvi_3679 0.55 +0.8
4,383,904 + Echvi_3679 0.55 -0.7
4,383,905 - Echvi_3679 0.55 -0.3
4,384,041 + Echvi_3679 0.79 +0.1
4,384,042 - Echvi_3679 0.79 -1.9
4,384,148 + -0.1
4,384,148 + -0.1
4,384,148 + -1.7
4,384,157 + +0.0
4,384,158 - -1.1
4,384,160 + -0.0
4,384,160 + +0.8
4,384,160 + +0.0
4,384,214 - -0.2
4,384,214 - -0.3
4,384,214 - -1.6
4,384,327 - +0.3
4,384,346 - -1.0
4,384,346 - +0.1
4,384,403 - -0.6
4,384,435 + -2.3
4,384,495 - Echvi_3680 0.17 +0.3
4,384,648 - Echvi_3680 0.64 -0.3
4,384,648 - Echvi_3680 0.64 -0.8
4,384,648 - Echvi_3680 0.64 -0.2
4,384,648 - Echvi_3680 0.64 +0.3
4,384,648 - Echvi_3680 0.64 -0.4
4,384,734 + -0.2
4,384,734 + +0.9
4,384,734 + -0.5
4,384,735 - -0.1
4,384,735 - +1.5
4,384,735 - -0.4
4,384,735 - -1.9
4,384,738 - -0.4
4,384,822 - Echvi_3681 0.12 +0.7
4,384,867 - Echvi_3681 0.21 +0.6
4,385,035 + Echvi_3681 0.54 -1.7
4,385,035 + Echvi_3681 0.54 +0.6
4,385,036 - Echvi_3681 0.54 -0.3
4,385,038 - Echvi_3681 0.55 +1.0
4,385,038 - Echvi_3681 0.55 +0.3
4,385,158 + Echvi_3681 0.79 +1.5
4,385,159 - Echvi_3681 0.79 +1.2
4,385,311 + +0.7
4,385,404 + Echvi_3682 0.14 -0.9
4,385,444 + Echvi_3682 0.22 +1.6
4,385,445 - Echvi_3682 0.22 +1.1
4,385,468 + Echvi_3682 0.27 -0.6
4,385,468 + Echvi_3682 0.27 +0.6
4,385,469 - Echvi_3682 0.27 -1.8
4,385,501 + Echvi_3682 0.34 -0.8
4,385,502 - Echvi_3682 0.34 +0.1
4,385,630 + Echvi_3682 0.61 -1.0
4,385,657 - Echvi_3682 0.66 -0.6
4,385,695 + Echvi_3682 0.74 -0.5
4,385,755 + Echvi_3682 0.87 +0.9
4,385,762 - Echvi_3682 0.88 -1.4
4,385,768 + Echvi_3682 0.90 -0.4
4,385,768 + Echvi_3682 0.90 -0.6
4,385,808 + -0.6
4,385,810 + -0.4
4,386,054 + Echvi_3683 0.52 -1.1
4,386,054 + Echvi_3683 0.52 -0.7
4,386,055 - Echvi_3683 0.53 +0.9
4,386,055 - Echvi_3683 0.53 -2.5
4,386,120 + Echvi_3683 0.72 +1.3
4,386,121 - Echvi_3683 0.72 +2.9
4,386,139 + Echvi_3683 0.77 -0.4
4,386,140 - Echvi_3683 0.77 -1.8
4,386,140 - Echvi_3683 0.77 -0.1
4,386,180 - Echvi_3683 0.89 +1.3

Or see this region's nucleotide sequence