Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2567

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2566 and Echvi_2567 are separated by 52 nucleotidesEchvi_2567 and Echvi_2568 are separated by 421 nucleotides Echvi_2566: Echvi_2566 - biotin synthetase, at 3,043,079 to 3,044,056 _2566 Echvi_2567: Echvi_2567 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 3,044,109 to 3,045,788 _2567 Echvi_2568: Echvi_2568 - hypothetical protein, at 3,046,210 to 3,047,412 _2568 Position (kb) 3044 3045 3046Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3043.154 kb on + strandat 3043.206 kb on + strand, within Echvi_2566at 3043.206 kb on + strand, within Echvi_2566at 3043.206 kb on + strand, within Echvi_2566at 3043.206 kb on + strand, within Echvi_2566at 3043.206 kb on + strand, within Echvi_2566at 3043.207 kb on - strand, within Echvi_2566at 3043.207 kb on - strand, within Echvi_2566at 3043.207 kb on - strand, within Echvi_2566at 3043.207 kb on - strand, within Echvi_2566at 3043.207 kb on - strand, within Echvi_2566at 3043.210 kb on + strand, within Echvi_2566at 3043.210 kb on + strand, within Echvi_2566at 3043.211 kb on - strand, within Echvi_2566at 3043.211 kb on - strand, within Echvi_2566at 3043.211 kb on - strand, within Echvi_2566at 3043.211 kb on - strand, within Echvi_2566at 3043.282 kb on + strand, within Echvi_2566at 3043.296 kb on + strand, within Echvi_2566at 3043.297 kb on - strand, within Echvi_2566at 3043.300 kb on + strand, within Echvi_2566at 3043.300 kb on + strand, within Echvi_2566at 3043.300 kb on + strand, within Echvi_2566at 3043.301 kb on - strand, within Echvi_2566at 3043.465 kb on - strand, within Echvi_2566at 3043.525 kb on - strand, within Echvi_2566at 3043.525 kb on - strand, within Echvi_2566at 3043.525 kb on - strand, within Echvi_2566at 3043.525 kb on - strand, within Echvi_2566at 3043.526 kb on + strand, within Echvi_2566at 3043.526 kb on + strand, within Echvi_2566at 3043.526 kb on + strand, within Echvi_2566at 3043.532 kb on + strand, within Echvi_2566at 3043.532 kb on + strand, within Echvi_2566at 3043.532 kb on + strand, within Echvi_2566at 3043.532 kb on + strand, within Echvi_2566at 3043.532 kb on + strand, within Echvi_2566at 3043.533 kb on - strand, within Echvi_2566at 3043.533 kb on - strand, within Echvi_2566at 3043.533 kb on - strand, within Echvi_2566at 3043.534 kb on + strand, within Echvi_2566at 3043.535 kb on - strand, within Echvi_2566at 3043.535 kb on - strand, within Echvi_2566at 3043.535 kb on - strand, within Echvi_2566at 3043.566 kb on - strand, within Echvi_2566at 3043.567 kb on + strand, within Echvi_2566at 3043.568 kb on - strand, within Echvi_2566at 3043.592 kb on + strand, within Echvi_2566at 3043.609 kb on + strand, within Echvi_2566at 3043.609 kb on + strand, within Echvi_2566at 3043.609 kb on + strand, within Echvi_2566at 3043.610 kb on - strand, within Echvi_2566at 3043.610 kb on - strand, within Echvi_2566at 3043.636 kb on + strand, within Echvi_2566at 3043.840 kb on + strand, within Echvi_2566at 3043.841 kb on - strand, within Echvi_2566at 3044.046 kb on + strandat 3044.055 kb on - strandat 3044.110 kb on + strandat 3044.110 kb on + strandat 3044.110 kb on + strandat 3044.288 kb on - strand, within Echvi_2567at 3044.351 kb on + strand, within Echvi_2567at 3044.351 kb on + strand, within Echvi_2567at 3044.351 kb on + strand, within Echvi_2567at 3044.351 kb on + strand, within Echvi_2567at 3044.351 kb on + strand, within Echvi_2567at 3044.384 kb on + strand, within Echvi_2567at 3044.389 kb on + strand, within Echvi_2567at 3044.390 kb on - strand, within Echvi_2567at 3044.471 kb on + strand, within Echvi_2567at 3044.910 kb on - strand, within Echvi_2567at 3045.007 kb on + strand, within Echvi_2567at 3045.192 kb on + strand, within Echvi_2567at 3045.192 kb on + strand, within Echvi_2567at 3045.192 kb on + strand, within Echvi_2567at 3045.193 kb on - strand, within Echvi_2567at 3045.251 kb on + strand, within Echvi_2567at 3045.277 kb on + strand, within Echvi_2567at 3045.278 kb on - strand, within Echvi_2567at 3045.295 kb on - strand, within Echvi_2567at 3045.345 kb on - strand, within Echvi_2567at 3045.354 kb on + strand, within Echvi_2567at 3045.354 kb on + strand, within Echvi_2567at 3045.423 kb on - strand, within Echvi_2567at 3045.461 kb on + strand, within Echvi_2567at 3045.462 kb on - strand, within Echvi_2567at 3045.480 kb on + strand, within Echvi_2567at 3045.480 kb on + strand, within Echvi_2567at 3045.596 kb on - strand, within Echvi_2567at 3045.661 kb on + strandat 3045.736 kb on - strandat 3045.755 kb on + strandat 3045.756 kb on - strandat 3045.821 kb on - strandat 3045.821 kb on - strandat 3045.821 kb on - strandat 3045.844 kb on + strandat 3045.845 kb on - strandat 3045.845 kb on - strandat 3045.846 kb on + strandat 3045.847 kb on - strandat 3045.878 kb on + strandat 3045.961 kb on + strandat 3046.021 kb on + strandat 3046.021 kb on + strandat 3046.021 kb on + strandat 3046.022 kb on - strandat 3046.050 kb on + strandat 3046.050 kb on + strandat 3046.051 kb on - strandat 3046.051 kb on - strandat 3046.119 kb on - strandat 3046.205 kb on + strandat 3046.205 kb on + strandat 3046.209 kb on + strandat 3046.218 kb on + strandat 3046.218 kb on + strandat 3046.222 kb on - strandat 3046.222 kb on - strandat 3046.225 kb on + strandat 3046.229 kb on + strandat 3046.239 kb on + strandat 3046.240 kb on - strandat 3046.240 kb on - strandat 3046.286 kb on + strandat 3046.287 kb on - strandat 3046.311 kb on - strandat 3046.555 kb on - strand, within Echvi_2568at 3046.629 kb on - strand, within Echvi_2568at 3046.648 kb on - strand, within Echvi_2568at 3046.668 kb on + strand, within Echvi_2568at 3046.675 kb on + strand, within Echvi_2568at 3046.693 kb on + strand, within Echvi_2568at 3046.693 kb on + strand, within Echvi_2568at 3046.693 kb on + strand, within Echvi_2568at 3046.694 kb on - strand, within Echvi_2568at 3046.694 kb on - strand, within Echvi_2568at 3046.694 kb on - strand, within Echvi_2568at 3046.784 kb on + strand, within Echvi_2568

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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3,043,154 + -0.4
3,043,206 + Echvi_2566 0.13 -0.7
3,043,206 + Echvi_2566 0.13 -0.4
3,043,206 + Echvi_2566 0.13 -0.7
3,043,206 + Echvi_2566 0.13 +0.1
3,043,206 + Echvi_2566 0.13 +0.7
3,043,207 - Echvi_2566 0.13 +0.3
3,043,207 - Echvi_2566 0.13 -0.3
3,043,207 - Echvi_2566 0.13 -0.7
3,043,207 - Echvi_2566 0.13 -1.6
3,043,207 - Echvi_2566 0.13 +0.2
3,043,210 + Echvi_2566 0.13 -1.6
3,043,210 + Echvi_2566 0.13 +0.6
3,043,211 - Echvi_2566 0.13 +0.1
3,043,211 - Echvi_2566 0.13 -0.9
3,043,211 - Echvi_2566 0.13 -0.7
3,043,211 - Echvi_2566 0.13 -1.4
3,043,282 + Echvi_2566 0.21 -0.4
3,043,296 + Echvi_2566 0.22 +0.3
3,043,297 - Echvi_2566 0.22 +0.3
3,043,300 + Echvi_2566 0.23 +0.4
3,043,300 + Echvi_2566 0.23 -0.3
3,043,300 + Echvi_2566 0.23 +0.9
3,043,301 - Echvi_2566 0.23 -0.2
3,043,465 - Echvi_2566 0.39 -1.0
3,043,525 - Echvi_2566 0.46 -2.1
3,043,525 - Echvi_2566 0.46 -1.3
3,043,525 - Echvi_2566 0.46 +1.9
3,043,525 - Echvi_2566 0.46 -0.2
3,043,526 + Echvi_2566 0.46 -0.9
3,043,526 + Echvi_2566 0.46 +0.3
3,043,526 + Echvi_2566 0.46 +0.9
3,043,532 + Echvi_2566 0.46 -0.4
3,043,532 + Echvi_2566 0.46 +0.3
3,043,532 + Echvi_2566 0.46 -0.6
3,043,532 + Echvi_2566 0.46 -2.3
3,043,532 + Echvi_2566 0.46 -0.9
3,043,533 - Echvi_2566 0.46 +1.8
3,043,533 - Echvi_2566 0.46 +0.5
3,043,533 - Echvi_2566 0.46 -1.9
3,043,534 + Echvi_2566 0.47 -0.6
3,043,535 - Echvi_2566 0.47 +0.3
3,043,535 - Echvi_2566 0.47 -0.1
3,043,535 - Echvi_2566 0.47 +0.9
3,043,566 - Echvi_2566 0.50 +1.5
3,043,567 + Echvi_2566 0.50 +1.2
3,043,568 - Echvi_2566 0.50 -0.2
3,043,592 + Echvi_2566 0.52 +0.2
3,043,609 + Echvi_2566 0.54 +0.6
3,043,609 + Echvi_2566 0.54 -0.9
3,043,609 + Echvi_2566 0.54 +3.1
3,043,610 - Echvi_2566 0.54 -1.2
3,043,610 - Echvi_2566 0.54 +0.7
3,043,636 + Echvi_2566 0.57 -0.2
3,043,840 + Echvi_2566 0.78 -0.9
3,043,841 - Echvi_2566 0.78 +0.2
3,044,046 + -0.1
3,044,055 - -1.3
3,044,110 + +0.5
3,044,110 + +0.1
3,044,110 + +0.9
3,044,288 - Echvi_2567 0.11 +0.3
3,044,351 + Echvi_2567 0.14 +0.1
3,044,351 + Echvi_2567 0.14 +0.5
3,044,351 + Echvi_2567 0.14 +1.6
3,044,351 + Echvi_2567 0.14 -0.6
3,044,351 + Echvi_2567 0.14 -0.4
3,044,384 + Echvi_2567 0.16 +0.1
3,044,389 + Echvi_2567 0.17 +1.3
3,044,390 - Echvi_2567 0.17 -1.0
3,044,471 + Echvi_2567 0.22 +0.2
3,044,910 - Echvi_2567 0.48 +0.2
3,045,007 + Echvi_2567 0.53 +0.7
3,045,192 + Echvi_2567 0.64 +0.8
3,045,192 + Echvi_2567 0.64 +1.3
3,045,192 + Echvi_2567 0.64 +0.8
3,045,193 - Echvi_2567 0.65 +0.9
3,045,251 + Echvi_2567 0.68 -0.1
3,045,277 + Echvi_2567 0.70 +0.9
3,045,278 - Echvi_2567 0.70 +0.9
3,045,295 - Echvi_2567 0.71 -1.1
3,045,345 - Echvi_2567 0.74 +0.3
3,045,354 + Echvi_2567 0.74 -1.2
3,045,354 + Echvi_2567 0.74 +0.8
3,045,423 - Echvi_2567 0.78 +1.2
3,045,461 + Echvi_2567 0.80 -0.6
3,045,462 - Echvi_2567 0.81 +0.5
3,045,480 + Echvi_2567 0.82 +0.0
3,045,480 + Echvi_2567 0.82 +0.5
3,045,596 - Echvi_2567 0.89 -0.8
3,045,661 + -0.1
3,045,736 - -1.7
3,045,755 + +2.4
3,045,756 - +0.8
3,045,821 - +0.8
3,045,821 - +1.9
3,045,821 - -0.3
3,045,844 + -0.6
3,045,845 - -1.7
3,045,845 - +0.3
3,045,846 + -0.1
3,045,847 - +0.3
3,045,878 + +0.4
3,045,961 + +0.7
3,046,021 + -0.8
3,046,021 + -1.2
3,046,021 + -0.9
3,046,022 - -0.1
3,046,050 + -0.4
3,046,050 + +0.4
3,046,051 - -0.2
3,046,051 - +0.1
3,046,119 - -0.2
3,046,205 + +0.1
3,046,205 + +2.1
3,046,209 + -0.5
3,046,218 + +0.3
3,046,218 + -0.3
3,046,222 - -0.7
3,046,222 - -0.4
3,046,225 + +0.8
3,046,229 + +0.2
3,046,239 + -1.4
3,046,240 - -0.3
3,046,240 - +1.9
3,046,286 + +0.1
3,046,287 - +0.6
3,046,311 - -0.1
3,046,555 - Echvi_2568 0.29 -0.7
3,046,629 - Echvi_2568 0.35 +0.8
3,046,648 - Echvi_2568 0.36 -0.9
3,046,668 + Echvi_2568 0.38 +0.7
3,046,675 + Echvi_2568 0.39 +0.9
3,046,693 + Echvi_2568 0.40 -0.3
3,046,693 + Echvi_2568 0.40 +0.1
3,046,693 + Echvi_2568 0.40 +0.4
3,046,694 - Echvi_2568 0.40 +0.3
3,046,694 - Echvi_2568 0.40 -1.3
3,046,694 - Echvi_2568 0.40 -0.0
3,046,784 + Echvi_2568 0.48 +1.5

Or see this region's nucleotide sequence