Experiment: Maltitol 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2168 and Echvi_2169 are separated by 793 nucleotides Echvi_2169 and Echvi_2170 are separated by 101 nucleotides
Echvi_2168: Echvi_2168 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 2,586,410 to 2,587,024
_2168
Echvi_2169: Echvi_2169 - Fe2+-dicitrate sensor, membrane component, at 2,587,818 to 2,588,813
_2169
Echvi_2170: Echvi_2170 - TonB-linked outer membrane protein, SusC/RagA family, at 2,588,915 to 2,592,397
_2170
Position (kb)
2587
2588
2589 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2586.851 kb on - strand, within Echvi_2168 at 2586.888 kb on + strand, within Echvi_2168 at 2586.939 kb on + strand, within Echvi_2168 at 2587.022 kb on + strand at 2587.023 kb on - strand at 2587.062 kb on + strand at 2587.121 kb on + strand at 2587.121 kb on + strand at 2587.121 kb on + strand at 2587.156 kb on - strand at 2587.156 kb on - strand at 2587.156 kb on - strand at 2587.191 kb on - strand at 2587.209 kb on + strand at 2587.209 kb on + strand at 2587.209 kb on + strand at 2587.209 kb on + strand at 2587.213 kb on + strand at 2587.214 kb on - strand at 2587.214 kb on - strand at 2587.214 kb on - strand at 2587.249 kb on + strand at 2587.272 kb on - strand at 2587.285 kb on + strand at 2587.321 kb on + strand at 2587.321 kb on + strand at 2587.321 kb on + strand at 2587.322 kb on - strand at 2587.322 kb on - strand at 2587.322 kb on - strand at 2587.354 kb on - strand at 2587.354 kb on - strand at 2587.371 kb on - strand at 2587.591 kb on + strand at 2587.653 kb on + strand at 2587.673 kb on - strand at 2587.803 kb on - strand at 2587.882 kb on + strand at 2587.883 kb on - strand at 2587.931 kb on - strand, within Echvi_2169 at 2588.128 kb on - strand, within Echvi_2169 at 2588.130 kb on - strand, within Echvi_2169 at 2588.130 kb on - strand, within Echvi_2169 at 2588.176 kb on - strand, within Echvi_2169 at 2588.176 kb on - strand, within Echvi_2169 at 2588.176 kb on - strand, within Echvi_2169 at 2588.176 kb on - strand, within Echvi_2169 at 2588.176 kb on - strand, within Echvi_2169 at 2588.178 kb on - strand, within Echvi_2169 at 2588.178 kb on - strand, within Echvi_2169 at 2588.206 kb on + strand, within Echvi_2169 at 2588.206 kb on + strand, within Echvi_2169 at 2588.256 kb on - strand, within Echvi_2169 at 2588.299 kb on + strand, within Echvi_2169 at 2588.428 kb on + strand, within Echvi_2169 at 2588.455 kb on + strand, within Echvi_2169 at 2588.569 kb on + strand, within Echvi_2169 at 2588.570 kb on - strand, within Echvi_2169 at 2588.691 kb on - strand, within Echvi_2169 at 2588.776 kb on - strand at 2588.798 kb on - strand at 2588.798 kb on - strand at 2588.941 kb on + strand at 2588.941 kb on + strand at 2588.942 kb on - strand at 2588.953 kb on + strand at 2588.965 kb on - strand at 2588.966 kb on + strand at 2588.966 kb on + strand at 2588.971 kb on + strand at 2588.971 kb on + strand at 2588.972 kb on - strand at 2588.975 kb on - strand at 2588.977 kb on - strand at 2589.119 kb on + strand at 2589.120 kb on - strand at 2589.154 kb on + strand at 2589.154 kb on + strand at 2589.193 kb on - strand at 2589.201 kb on + strand at 2589.202 kb on - strand at 2589.307 kb on + strand, within Echvi_2170 at 2589.421 kb on + strand, within Echvi_2170 at 2589.422 kb on - strand, within Echvi_2170 at 2589.425 kb on + strand, within Echvi_2170 at 2589.425 kb on + strand, within Echvi_2170 at 2589.425 kb on + strand, within Echvi_2170 at 2589.425 kb on + strand, within Echvi_2170 at 2589.425 kb on + strand, within Echvi_2170 at 2589.426 kb on - strand, within Echvi_2170 at 2589.426 kb on - strand, within Echvi_2170 at 2589.426 kb on - strand, within Echvi_2170 at 2589.426 kb on - strand, within Echvi_2170 at 2589.426 kb on - strand, within Echvi_2170 at 2589.427 kb on + strand, within Echvi_2170 at 2589.427 kb on + strand, within Echvi_2170 at 2589.428 kb on - strand, within Echvi_2170 at 2589.428 kb on - strand, within Echvi_2170 at 2589.460 kb on - strand, within Echvi_2170 at 2589.463 kb on - strand, within Echvi_2170 at 2589.467 kb on + strand, within Echvi_2170 at 2589.468 kb on - strand, within Echvi_2170 at 2589.468 kb on - strand, within Echvi_2170 at 2589.477 kb on - strand, within Echvi_2170 at 2589.478 kb on + strand, within Echvi_2170 at 2589.478 kb on + strand, within Echvi_2170 at 2589.478 kb on + strand, within Echvi_2170 at 2589.478 kb on + strand, within Echvi_2170 at 2589.478 kb on + strand, within Echvi_2170 at 2589.479 kb on - strand, within Echvi_2170 at 2589.479 kb on - strand, within Echvi_2170 at 2589.479 kb on - strand, within Echvi_2170 at 2589.479 kb on - strand, within Echvi_2170 at 2589.508 kb on + strand, within Echvi_2170 at 2589.650 kb on - strand, within Echvi_2170 at 2589.769 kb on + strand, within Echvi_2170 at 2589.770 kb on - strand, within Echvi_2170
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol 20mM (C) remove 2,586,851 - Echvi_2168 0.72 -0.5 2,586,888 + Echvi_2168 0.78 +0.8 2,586,939 + Echvi_2168 0.86 +0.5 2,587,022 + -0.2 2,587,023 - -1.0 2,587,062 + -1.0 2,587,121 + +3.0 2,587,121 + -0.1 2,587,121 + +0.7 2,587,156 - -0.2 2,587,156 - -1.0 2,587,156 - -2.2 2,587,191 - -0.1 2,587,209 + -1.1 2,587,209 + +0.4 2,587,209 + +0.1 2,587,209 + -1.6 2,587,213 + -0.2 2,587,214 - -0.2 2,587,214 - -0.2 2,587,214 - -1.0 2,587,249 + -0.3 2,587,272 - -0.1 2,587,285 + +1.2 2,587,321 + -0.1 2,587,321 + -0.1 2,587,321 + -0.3 2,587,322 - +0.4 2,587,322 - +4.2 2,587,322 - +0.6 2,587,354 - -0.8 2,587,354 - +0.2 2,587,371 - -0.3 2,587,591 + +1.0 2,587,653 + +1.0 2,587,673 - -0.6 2,587,803 - -0.6 2,587,882 + -0.5 2,587,883 - -1.0 2,587,931 - Echvi_2169 0.11 +0.6 2,588,128 - Echvi_2169 0.31 -0.2 2,588,130 - Echvi_2169 0.31 +2.8 2,588,130 - Echvi_2169 0.31 +0.1 2,588,176 - Echvi_2169 0.36 -0.4 2,588,176 - Echvi_2169 0.36 +0.1 2,588,176 - Echvi_2169 0.36 +0.0 2,588,176 - Echvi_2169 0.36 +2.4 2,588,176 - Echvi_2169 0.36 +0.5 2,588,178 - Echvi_2169 0.36 -0.2 2,588,178 - Echvi_2169 0.36 +0.1 2,588,206 + Echvi_2169 0.39 +1.5 2,588,206 + Echvi_2169 0.39 +3.8 2,588,256 - Echvi_2169 0.44 -2.8 2,588,299 + Echvi_2169 0.48 -1.6 2,588,428 + Echvi_2169 0.61 -1.6 2,588,455 + Echvi_2169 0.64 +1.8 2,588,569 + Echvi_2169 0.75 +2.6 2,588,570 - Echvi_2169 0.76 +0.0 2,588,691 - Echvi_2169 0.88 +1.2 2,588,776 - -0.6 2,588,798 - +0.8 2,588,798 - -0.6 2,588,941 + +0.9 2,588,941 + -1.5 2,588,942 - -2.5 2,588,953 + +0.0 2,588,965 - +0.1 2,588,966 + -0.9 2,588,966 + +0.0 2,588,971 + -0.4 2,588,971 + +2.3 2,588,972 - +0.9 2,588,975 - -0.6 2,588,977 - +0.4 2,589,119 + -0.2 2,589,120 - -0.0 2,589,154 + -0.1 2,589,154 + +0.1 2,589,193 - -1.8 2,589,201 + +1.1 2,589,202 - +0.5 2,589,307 + Echvi_2170 0.11 +0.2 2,589,421 + Echvi_2170 0.15 +1.4 2,589,422 - Echvi_2170 0.15 -0.9 2,589,425 + Echvi_2170 0.15 -0.8 2,589,425 + Echvi_2170 0.15 -0.2 2,589,425 + Echvi_2170 0.15 +0.1 2,589,425 + Echvi_2170 0.15 -0.3 2,589,425 + Echvi_2170 0.15 -0.1 2,589,426 - Echvi_2170 0.15 -2.1 2,589,426 - Echvi_2170 0.15 +0.2 2,589,426 - Echvi_2170 0.15 +0.3 2,589,426 - Echvi_2170 0.15 -0.9 2,589,426 - Echvi_2170 0.15 -0.3 2,589,427 + Echvi_2170 0.15 -0.6 2,589,427 + Echvi_2170 0.15 +0.1 2,589,428 - Echvi_2170 0.15 +0.3 2,589,428 - Echvi_2170 0.15 -0.0 2,589,460 - Echvi_2170 0.16 +1.5 2,589,463 - Echvi_2170 0.16 -0.3 2,589,467 + Echvi_2170 0.16 +0.3 2,589,468 - Echvi_2170 0.16 -0.4 2,589,468 - Echvi_2170 0.16 -1.1 2,589,477 - Echvi_2170 0.16 -0.9 2,589,478 + Echvi_2170 0.16 +0.2 2,589,478 + Echvi_2170 0.16 +1.6 2,589,478 + Echvi_2170 0.16 +1.0 2,589,478 + Echvi_2170 0.16 +0.5 2,589,478 + Echvi_2170 0.16 -0.4 2,589,479 - Echvi_2170 0.16 -0.4 2,589,479 - Echvi_2170 0.16 +0.0 2,589,479 - Echvi_2170 0.16 -0.5 2,589,479 - Echvi_2170 0.16 +0.3 2,589,508 + Echvi_2170 0.17 +0.6 2,589,650 - Echvi_2170 0.21 -0.1 2,589,769 + Echvi_2170 0.25 -3.2 2,589,770 - Echvi_2170 0.25 -0.1
Or see this region's nucleotide sequence