Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2169

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2168 and Echvi_2169 are separated by 793 nucleotidesEchvi_2169 and Echvi_2170 are separated by 101 nucleotides Echvi_2168: Echvi_2168 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 2,586,410 to 2,587,024 _2168 Echvi_2169: Echvi_2169 - Fe2+-dicitrate sensor, membrane component, at 2,587,818 to 2,588,813 _2169 Echvi_2170: Echvi_2170 - TonB-linked outer membrane protein, SusC/RagA family, at 2,588,915 to 2,592,397 _2170 Position (kb) 2587 2588 2589Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2586.851 kb on - strand, within Echvi_2168at 2586.888 kb on + strand, within Echvi_2168at 2586.939 kb on + strand, within Echvi_2168at 2587.022 kb on + strandat 2587.023 kb on - strandat 2587.062 kb on + strandat 2587.121 kb on + strandat 2587.121 kb on + strandat 2587.121 kb on + strandat 2587.156 kb on - strandat 2587.156 kb on - strandat 2587.156 kb on - strandat 2587.191 kb on - strandat 2587.209 kb on + strandat 2587.209 kb on + strandat 2587.209 kb on + strandat 2587.209 kb on + strandat 2587.213 kb on + strandat 2587.214 kb on - strandat 2587.214 kb on - strandat 2587.214 kb on - strandat 2587.249 kb on + strandat 2587.272 kb on - strandat 2587.285 kb on + strandat 2587.321 kb on + strandat 2587.321 kb on + strandat 2587.321 kb on + strandat 2587.322 kb on - strandat 2587.322 kb on - strandat 2587.322 kb on - strandat 2587.354 kb on - strandat 2587.354 kb on - strandat 2587.371 kb on - strandat 2587.591 kb on + strandat 2587.653 kb on + strandat 2587.673 kb on - strandat 2587.803 kb on - strandat 2587.882 kb on + strandat 2587.883 kb on - strandat 2587.931 kb on - strand, within Echvi_2169at 2588.128 kb on - strand, within Echvi_2169at 2588.130 kb on - strand, within Echvi_2169at 2588.130 kb on - strand, within Echvi_2169at 2588.176 kb on - strand, within Echvi_2169at 2588.176 kb on - strand, within Echvi_2169at 2588.176 kb on - strand, within Echvi_2169at 2588.176 kb on - strand, within Echvi_2169at 2588.176 kb on - strand, within Echvi_2169at 2588.178 kb on - strand, within Echvi_2169at 2588.178 kb on - strand, within Echvi_2169at 2588.206 kb on + strand, within Echvi_2169at 2588.206 kb on + strand, within Echvi_2169at 2588.256 kb on - strand, within Echvi_2169at 2588.299 kb on + strand, within Echvi_2169at 2588.428 kb on + strand, within Echvi_2169at 2588.455 kb on + strand, within Echvi_2169at 2588.569 kb on + strand, within Echvi_2169at 2588.570 kb on - strand, within Echvi_2169at 2588.691 kb on - strand, within Echvi_2169at 2588.776 kb on - strandat 2588.798 kb on - strandat 2588.798 kb on - strandat 2588.941 kb on + strandat 2588.941 kb on + strandat 2588.942 kb on - strandat 2588.953 kb on + strandat 2588.965 kb on - strandat 2588.966 kb on + strandat 2588.966 kb on + strandat 2588.971 kb on + strandat 2588.971 kb on + strandat 2588.972 kb on - strandat 2588.975 kb on - strandat 2588.977 kb on - strandat 2589.119 kb on + strandat 2589.120 kb on - strandat 2589.154 kb on + strandat 2589.154 kb on + strandat 2589.193 kb on - strandat 2589.201 kb on + strandat 2589.202 kb on - strandat 2589.307 kb on + strand, within Echvi_2170at 2589.421 kb on + strand, within Echvi_2170at 2589.422 kb on - strand, within Echvi_2170at 2589.425 kb on + strand, within Echvi_2170at 2589.425 kb on + strand, within Echvi_2170at 2589.425 kb on + strand, within Echvi_2170at 2589.425 kb on + strand, within Echvi_2170at 2589.425 kb on + strand, within Echvi_2170at 2589.426 kb on - strand, within Echvi_2170at 2589.426 kb on - strand, within Echvi_2170at 2589.426 kb on - strand, within Echvi_2170at 2589.426 kb on - strand, within Echvi_2170at 2589.426 kb on - strand, within Echvi_2170at 2589.427 kb on + strand, within Echvi_2170at 2589.427 kb on + strand, within Echvi_2170at 2589.428 kb on - strand, within Echvi_2170at 2589.428 kb on - strand, within Echvi_2170at 2589.460 kb on - strand, within Echvi_2170at 2589.463 kb on - strand, within Echvi_2170at 2589.467 kb on + strand, within Echvi_2170at 2589.468 kb on - strand, within Echvi_2170at 2589.468 kb on - strand, within Echvi_2170at 2589.477 kb on - strand, within Echvi_2170at 2589.478 kb on + strand, within Echvi_2170at 2589.478 kb on + strand, within Echvi_2170at 2589.478 kb on + strand, within Echvi_2170at 2589.478 kb on + strand, within Echvi_2170at 2589.478 kb on + strand, within Echvi_2170at 2589.479 kb on - strand, within Echvi_2170at 2589.479 kb on - strand, within Echvi_2170at 2589.479 kb on - strand, within Echvi_2170at 2589.479 kb on - strand, within Echvi_2170at 2589.508 kb on + strand, within Echvi_2170at 2589.650 kb on - strand, within Echvi_2170at 2589.769 kb on + strand, within Echvi_2170at 2589.770 kb on - strand, within Echvi_2170

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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2,586,851 - Echvi_2168 0.72 -0.5
2,586,888 + Echvi_2168 0.78 +0.8
2,586,939 + Echvi_2168 0.86 +0.5
2,587,022 + -0.2
2,587,023 - -1.0
2,587,062 + -1.0
2,587,121 + +3.0
2,587,121 + -0.1
2,587,121 + +0.7
2,587,156 - -0.2
2,587,156 - -1.0
2,587,156 - -2.2
2,587,191 - -0.1
2,587,209 + -1.1
2,587,209 + +0.4
2,587,209 + +0.1
2,587,209 + -1.6
2,587,213 + -0.2
2,587,214 - -0.2
2,587,214 - -0.2
2,587,214 - -1.0
2,587,249 + -0.3
2,587,272 - -0.1
2,587,285 + +1.2
2,587,321 + -0.1
2,587,321 + -0.1
2,587,321 + -0.3
2,587,322 - +0.4
2,587,322 - +4.2
2,587,322 - +0.6
2,587,354 - -0.8
2,587,354 - +0.2
2,587,371 - -0.3
2,587,591 + +1.0
2,587,653 + +1.0
2,587,673 - -0.6
2,587,803 - -0.6
2,587,882 + -0.5
2,587,883 - -1.0
2,587,931 - Echvi_2169 0.11 +0.6
2,588,128 - Echvi_2169 0.31 -0.2
2,588,130 - Echvi_2169 0.31 +2.8
2,588,130 - Echvi_2169 0.31 +0.1
2,588,176 - Echvi_2169 0.36 -0.4
2,588,176 - Echvi_2169 0.36 +0.1
2,588,176 - Echvi_2169 0.36 +0.0
2,588,176 - Echvi_2169 0.36 +2.4
2,588,176 - Echvi_2169 0.36 +0.5
2,588,178 - Echvi_2169 0.36 -0.2
2,588,178 - Echvi_2169 0.36 +0.1
2,588,206 + Echvi_2169 0.39 +1.5
2,588,206 + Echvi_2169 0.39 +3.8
2,588,256 - Echvi_2169 0.44 -2.8
2,588,299 + Echvi_2169 0.48 -1.6
2,588,428 + Echvi_2169 0.61 -1.6
2,588,455 + Echvi_2169 0.64 +1.8
2,588,569 + Echvi_2169 0.75 +2.6
2,588,570 - Echvi_2169 0.76 +0.0
2,588,691 - Echvi_2169 0.88 +1.2
2,588,776 - -0.6
2,588,798 - +0.8
2,588,798 - -0.6
2,588,941 + +0.9
2,588,941 + -1.5
2,588,942 - -2.5
2,588,953 + +0.0
2,588,965 - +0.1
2,588,966 + -0.9
2,588,966 + +0.0
2,588,971 + -0.4
2,588,971 + +2.3
2,588,972 - +0.9
2,588,975 - -0.6
2,588,977 - +0.4
2,589,119 + -0.2
2,589,120 - -0.0
2,589,154 + -0.1
2,589,154 + +0.1
2,589,193 - -1.8
2,589,201 + +1.1
2,589,202 - +0.5
2,589,307 + Echvi_2170 0.11 +0.2
2,589,421 + Echvi_2170 0.15 +1.4
2,589,422 - Echvi_2170 0.15 -0.9
2,589,425 + Echvi_2170 0.15 -0.8
2,589,425 + Echvi_2170 0.15 -0.2
2,589,425 + Echvi_2170 0.15 +0.1
2,589,425 + Echvi_2170 0.15 -0.3
2,589,425 + Echvi_2170 0.15 -0.1
2,589,426 - Echvi_2170 0.15 -2.1
2,589,426 - Echvi_2170 0.15 +0.2
2,589,426 - Echvi_2170 0.15 +0.3
2,589,426 - Echvi_2170 0.15 -0.9
2,589,426 - Echvi_2170 0.15 -0.3
2,589,427 + Echvi_2170 0.15 -0.6
2,589,427 + Echvi_2170 0.15 +0.1
2,589,428 - Echvi_2170 0.15 +0.3
2,589,428 - Echvi_2170 0.15 -0.0
2,589,460 - Echvi_2170 0.16 +1.5
2,589,463 - Echvi_2170 0.16 -0.3
2,589,467 + Echvi_2170 0.16 +0.3
2,589,468 - Echvi_2170 0.16 -0.4
2,589,468 - Echvi_2170 0.16 -1.1
2,589,477 - Echvi_2170 0.16 -0.9
2,589,478 + Echvi_2170 0.16 +0.2
2,589,478 + Echvi_2170 0.16 +1.6
2,589,478 + Echvi_2170 0.16 +1.0
2,589,478 + Echvi_2170 0.16 +0.5
2,589,478 + Echvi_2170 0.16 -0.4
2,589,479 - Echvi_2170 0.16 -0.4
2,589,479 - Echvi_2170 0.16 +0.0
2,589,479 - Echvi_2170 0.16 -0.5
2,589,479 - Echvi_2170 0.16 +0.3
2,589,508 + Echvi_2170 0.17 +0.6
2,589,650 - Echvi_2170 0.21 -0.1
2,589,769 + Echvi_2170 0.25 -3.2
2,589,770 - Echvi_2170 0.25 -0.1

Or see this region's nucleotide sequence