Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0037

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0035 and Echvi_0036 are separated by 80 nucleotidesEchvi_0036 and Echvi_0037 are separated by 31 nucleotidesEchvi_0037 and Echvi_0038 overlap by 4 nucleotides Echvi_0035: Echvi_0035 - Domain of Unknown Function (DUF349)., at 33,615 to 34,907 _0035 Echvi_0036: Echvi_0036 - Protein of unknown function (DUF2795)., at 34,988 to 35,209 _0036 Echvi_0037: Echvi_0037 - Response regulator of the LytR/AlgR family, at 35,241 to 35,978 _0037 Echvi_0038: Echvi_0038 - Putative regulator of cell autolysis, at 35,975 to 37,018 _0038 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 34.346 kb on - strand, within Echvi_0035at 34.427 kb on + strand, within Echvi_0035at 34.427 kb on + strand, within Echvi_0035at 34.427 kb on + strand, within Echvi_0035at 34.445 kb on - strand, within Echvi_0035at 34.570 kb on + strand, within Echvi_0035at 34.571 kb on - strand, within Echvi_0035at 34.603 kb on - strand, within Echvi_0035at 34.626 kb on - strand, within Echvi_0035at 34.631 kb on + strand, within Echvi_0035at 34.631 kb on + strand, within Echvi_0035at 34.632 kb on - strand, within Echvi_0035at 34.632 kb on - strand, within Echvi_0035at 34.677 kb on + strand, within Echvi_0035at 34.678 kb on - strand, within Echvi_0035at 34.678 kb on - strand, within Echvi_0035at 34.678 kb on - strand, within Echvi_0035at 34.683 kb on - strand, within Echvi_0035at 34.683 kb on - strand, within Echvi_0035at 34.686 kb on + strand, within Echvi_0035at 34.686 kb on + strand, within Echvi_0035at 34.687 kb on - strand, within Echvi_0035at 34.689 kb on + strand, within Echvi_0035at 34.694 kb on + strand, within Echvi_0035at 34.695 kb on - strand, within Echvi_0035at 34.731 kb on - strand, within Echvi_0035at 34.852 kb on - strandat 34.881 kb on - strandat 34.884 kb on - strandat 34.938 kb on + strandat 35.242 kb on + strandat 35.242 kb on + strandat 35.242 kb on + strandat 35.273 kb on + strandat 35.309 kb on + strandat 35.354 kb on + strand, within Echvi_0037at 35.354 kb on + strand, within Echvi_0037at 35.355 kb on - strand, within Echvi_0037at 35.376 kb on - strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.377 kb on + strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.378 kb on - strand, within Echvi_0037at 35.388 kb on + strand, within Echvi_0037at 35.451 kb on - strand, within Echvi_0037at 35.452 kb on + strand, within Echvi_0037at 35.570 kb on - strand, within Echvi_0037at 35.570 kb on - strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.604 kb on + strand, within Echvi_0037at 35.728 kb on + strand, within Echvi_0037at 35.920 kb on + strandat 35.960 kb on + strandat 35.960 kb on + strandat 35.961 kb on - strandat 35.961 kb on - strandat 35.996 kb on + strandat 35.997 kb on - strandat 36.003 kb on - strandat 36.014 kb on - strandat 36.014 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.070 kb on - strandat 36.136 kb on - strand, within Echvi_0038at 36.162 kb on + strand, within Echvi_0038at 36.209 kb on - strand, within Echvi_0038at 36.260 kb on + strand, within Echvi_0038at 36.332 kb on + strand, within Echvi_0038at 36.349 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.368 kb on + strand, within Echvi_0038at 36.386 kb on + strand, within Echvi_0038at 36.498 kb on - strand, within Echvi_0038at 36.502 kb on + strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.503 kb on - strand, within Echvi_0038at 36.505 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.640 kb on + strand, within Echvi_0038at 36.642 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.879 kb on + strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.880 kb on - strand, within Echvi_0038at 36.944 kb on + strandat 36.944 kb on + strandat 36.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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34,346 - Echvi_0035 0.57 +1.0
34,427 + Echvi_0035 0.63 -0.3
34,427 + Echvi_0035 0.63 -1.1
34,427 + Echvi_0035 0.63 -0.3
34,445 - Echvi_0035 0.64 -1.1
34,570 + Echvi_0035 0.74 +0.4
34,571 - Echvi_0035 0.74 +1.1
34,603 - Echvi_0035 0.76 -1.5
34,626 - Echvi_0035 0.78 +1.3
34,631 + Echvi_0035 0.79 +0.3
34,631 + Echvi_0035 0.79 +2.7
34,632 - Echvi_0035 0.79 +0.7
34,632 - Echvi_0035 0.79 +0.6
34,677 + Echvi_0035 0.82 +0.8
34,678 - Echvi_0035 0.82 -1.0
34,678 - Echvi_0035 0.82 -1.6
34,678 - Echvi_0035 0.82 -0.1
34,683 - Echvi_0035 0.83 -0.8
34,683 - Echvi_0035 0.83 +1.2
34,686 + Echvi_0035 0.83 -0.5
34,686 + Echvi_0035 0.83 -0.4
34,687 - Echvi_0035 0.83 -1.3
34,689 + Echvi_0035 0.83 +0.3
34,694 + Echvi_0035 0.83 +0.7
34,695 - Echvi_0035 0.84 +0.9
34,731 - Echvi_0035 0.86 -0.1
34,852 - +0.1
34,881 - +1.4
34,884 - +1.3
34,938 + -0.7
35,242 + -0.3
35,242 + -0.1
35,242 + +0.4
35,273 + +0.2
35,309 + -0.7
35,354 + Echvi_0037 0.15 +0.9
35,354 + Echvi_0037 0.15 -0.2
35,355 - Echvi_0037 0.15 +2.6
35,376 - Echvi_0037 0.18 +1.4
35,377 + Echvi_0037 0.18 +1.0
35,377 + Echvi_0037 0.18 +0.5
35,377 + Echvi_0037 0.18 -1.7
35,377 + Echvi_0037 0.18 +0.2
35,378 - Echvi_0037 0.19 +0.8
35,378 - Echvi_0037 0.19 +1.4
35,378 - Echvi_0037 0.19 +1.3
35,378 - Echvi_0037 0.19 -0.1
35,378 - Echvi_0037 0.19 +0.5
35,388 + Echvi_0037 0.20 +0.1
35,451 - Echvi_0037 0.28 +1.3
35,452 + Echvi_0037 0.29 -1.2
35,570 - Echvi_0037 0.45 +1.6
35,570 - Echvi_0037 0.45 -1.6
35,604 + Echvi_0037 0.49 +2.6
35,604 + Echvi_0037 0.49 -1.3
35,604 + Echvi_0037 0.49 +1.9
35,728 + Echvi_0037 0.66 +0.5
35,920 + -0.3
35,960 + -0.2
35,960 + +0.5
35,961 - +0.7
35,961 - +2.3
35,996 + -0.7
35,997 - -1.8
36,003 - -0.7
36,014 - -2.2
36,014 - +0.0
36,070 - -2.4
36,070 - -1.6
36,070 - -2.3
36,070 - -0.2
36,136 - Echvi_0038 0.15 -1.2
36,162 + Echvi_0038 0.18 +1.0
36,209 - Echvi_0038 0.22 -2.2
36,260 + Echvi_0038 0.27 -0.9
36,332 + Echvi_0038 0.34 +0.3
36,349 + Echvi_0038 0.36 -0.8
36,368 + Echvi_0038 0.38 +2.6
36,368 + Echvi_0038 0.38 +0.2
36,386 + Echvi_0038 0.39 -1.8
36,498 - Echvi_0038 0.50 -1.1
36,502 + Echvi_0038 0.50 +1.2
36,503 - Echvi_0038 0.51 -0.3
36,503 - Echvi_0038 0.51 +1.0
36,505 + Echvi_0038 0.51 -1.6
36,640 + Echvi_0038 0.64 +0.6
36,640 + Echvi_0038 0.64 -1.0
36,642 + Echvi_0038 0.64 -1.6
36,879 + Echvi_0038 0.87 -1.4
36,879 + Echvi_0038 0.87 -0.3
36,879 + Echvi_0038 0.87 -2.6
36,879 + Echvi_0038 0.87 +0.2
36,880 - Echvi_0038 0.87 -0.4
36,880 - Echvi_0038 0.87 -1.4
36,880 - Echvi_0038 0.87 -1.1
36,880 - Echvi_0038 0.87 -2.6
36,944 + -1.3
36,944 + +0.0
36,945 - -2.4

Or see this region's nucleotide sequence