Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3280

Experiment: Lactitol 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3279 and Echvi_3280 are separated by 418 nucleotidesEchvi_3280 and Echvi_3281 are separated by 648 nucleotides Echvi_3279: Echvi_3279 - amino acid carrier protein, at 3,881,877 to 3,883,298 _3279 Echvi_3280: Echvi_3280 - hypothetical protein, at 3,883,717 to 3,883,854 _3280 Echvi_3281: Echvi_3281 - hypothetical protein, at 3,884,503 to 3,884,718 _3281 Position (kb) 3883 3884Strain fitness (log2 ratio) -2 -1 0 1 2at 3883.296 kb on + strandat 3883.388 kb on + strandat 3883.460 kb on - strandat 3883.460 kb on - strandat 3883.474 kb on + strandat 3883.495 kb on + strandat 3883.496 kb on - strandat 3883.500 kb on + strandat 3883.501 kb on - strandat 3883.522 kb on + strandat 3883.694 kb on - strandat 3883.694 kb on - strandat 3883.694 kb on - strandat 3884.009 kb on - strandat 3884.036 kb on - strandat 3884.036 kb on - strandat 3884.768 kb on + strandat 3884.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol 10mM (C)
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3,883,296 + -2.4
3,883,388 + +0.0
3,883,460 - +1.8
3,883,460 - +1.2
3,883,474 + -1.7
3,883,495 + -1.0
3,883,496 - -0.2
3,883,500 + -0.4
3,883,501 - -0.1
3,883,522 + -0.2
3,883,694 - -0.8
3,883,694 - -0.6
3,883,694 - +1.5
3,884,009 - -0.3
3,884,036 - +0.6
3,884,036 - -0.3
3,884,768 + +1.1
3,884,827 - +1.1

Or see this region's nucleotide sequence