Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0280 and Echvi_0281 are separated by 19 nucleotides Echvi_0281 and Echvi_0282 are separated by 101 nucleotides
Echvi_0280: Echvi_0280 - TonB-linked outer membrane protein, SusC/RagA family, at 286,070 to 289,246
_0280
Echvi_0281: Echvi_0281 - SusD family., at 289,266 to 291,128
_0281
Echvi_0282: Echvi_0282 - ASPIC and UnbV., at 291,230 to 294,565
_0282
Position (kb)
289
290
291
292 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 288.307 kb on - strand, within Echvi_0280 at 288.341 kb on + strand, within Echvi_0280 at 288.494 kb on + strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.496 kb on + strand, within Echvi_0280 at 288.508 kb on - strand, within Echvi_0280 at 288.518 kb on + strand, within Echvi_0280 at 288.618 kb on - strand, within Echvi_0280 at 288.710 kb on + strand, within Echvi_0280 at 288.711 kb on - strand, within Echvi_0280 at 288.844 kb on - strand, within Echvi_0280 at 288.844 kb on - strand, within Echvi_0280 at 288.869 kb on + strand, within Echvi_0280 at 288.989 kb on + strand at 288.989 kb on + strand at 288.990 kb on - strand at 289.010 kb on + strand at 289.031 kb on + strand at 289.032 kb on - strand at 289.161 kb on + strand at 289.162 kb on - strand at 289.215 kb on + strand at 289.215 kb on + strand at 289.216 kb on - strand at 289.231 kb on - strand at 289.244 kb on + strand at 289.251 kb on + strand at 289.284 kb on - strand at 289.290 kb on + strand at 289.290 kb on + strand at 289.291 kb on - strand at 289.322 kb on - strand at 289.334 kb on + strand at 289.335 kb on - strand at 289.387 kb on + strand at 289.387 kb on + strand at 289.388 kb on - strand at 289.388 kb on - strand at 289.388 kb on - strand at 289.388 kb on - strand at 289.432 kb on - strand at 289.526 kb on + strand, within Echvi_0281 at 289.526 kb on + strand, within Echvi_0281 at 289.530 kb on - strand, within Echvi_0281 at 289.592 kb on + strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.596 kb on + strand, within Echvi_0281 at 289.596 kb on + strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.603 kb on - strand, within Echvi_0281 at 289.603 kb on - strand, within Echvi_0281 at 289.617 kb on - strand, within Echvi_0281 at 289.637 kb on - strand, within Echvi_0281 at 289.637 kb on - strand, within Echvi_0281 at 289.697 kb on + strand, within Echvi_0281 at 289.710 kb on + strand, within Echvi_0281 at 289.731 kb on + strand, within Echvi_0281 at 289.734 kb on + strand, within Echvi_0281 at 289.764 kb on + strand, within Echvi_0281 at 289.785 kb on + strand, within Echvi_0281 at 289.832 kb on - strand, within Echvi_0281 at 289.832 kb on - strand, within Echvi_0281 at 289.895 kb on + strand, within Echvi_0281 at 289.927 kb on + strand, within Echvi_0281 at 289.935 kb on + strand, within Echvi_0281 at 290.022 kb on + strand, within Echvi_0281 at 290.113 kb on + strand, within Echvi_0281 at 290.113 kb on + strand, within Echvi_0281 at 290.151 kb on + strand, within Echvi_0281 at 290.319 kb on + strand, within Echvi_0281 at 290.380 kb on - strand, within Echvi_0281 at 290.558 kb on + strand, within Echvi_0281 at 290.558 kb on + strand, within Echvi_0281 at 290.581 kb on - strand, within Echvi_0281 at 290.583 kb on - strand, within Echvi_0281 at 290.592 kb on + strand, within Echvi_0281 at 290.593 kb on - strand, within Echvi_0281 at 290.625 kb on - strand, within Echvi_0281 at 290.639 kb on + strand, within Echvi_0281 at 290.694 kb on + strand, within Echvi_0281 at 290.695 kb on - strand, within Echvi_0281 at 290.699 kb on - strand, within Echvi_0281 at 290.844 kb on + strand, within Echvi_0281 at 290.845 kb on - strand, within Echvi_0281 at 290.991 kb on + strand at 290.991 kb on + strand at 291.014 kb on - strand at 291.165 kb on + strand at 291.165 kb on + strand at 291.166 kb on - strand at 291.166 kb on - strand at 291.166 kb on - strand at 291.187 kb on + strand at 291.200 kb on + strand at 291.204 kb on + strand at 291.223 kb on + strand at 291.223 kb on + strand at 291.223 kb on + strand at 291.223 kb on + strand at 291.223 kb on + strand at 291.223 kb on + strand at 291.224 kb on - strand at 291.230 kb on - strand at 291.235 kb on + strand at 291.235 kb on + strand at 291.235 kb on + strand at 291.240 kb on + strand at 291.240 kb on + strand at 291.285 kb on + strand at 291.286 kb on - strand at 291.292 kb on + strand at 291.292 kb on + strand at 291.292 kb on + strand at 291.293 kb on - strand at 291.417 kb on - strand at 291.417 kb on - strand at 291.486 kb on - strand at 291.554 kb on - strand at 291.642 kb on + strand, within Echvi_0282 at 291.644 kb on + strand, within Echvi_0282 at 291.644 kb on + strand, within Echvi_0282 at 291.644 kb on + strand, within Echvi_0282 at 291.644 kb on + strand, within Echvi_0282 at 291.644 kb on + strand, within Echvi_0282 at 291.644 kb on + strand, within Echvi_0282 at 291.645 kb on - strand, within Echvi_0282 at 291.645 kb on - strand, within Echvi_0282 at 291.645 kb on - strand, within Echvi_0282 at 291.654 kb on - strand, within Echvi_0282 at 291.755 kb on + strand, within Echvi_0282 at 291.776 kb on - strand, within Echvi_0282 at 291.957 kb on + strand, within Echvi_0282 at 292.049 kb on + strand, within Echvi_0282 at 292.050 kb on - strand, within Echvi_0282 at 292.050 kb on - strand, within Echvi_0282 at 292.050 kb on - strand, within Echvi_0282 at 292.064 kb on + strand, within Echvi_0282 at 292.064 kb on + strand, within Echvi_0282 at 292.085 kb on + strand, within Echvi_0282 at 292.090 kb on + strand, within Echvi_0282 at 292.090 kb on + strand, within Echvi_0282 at 292.091 kb on - strand, within Echvi_0282
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 288,307 - Echvi_0280 0.70 -1.2 288,341 + Echvi_0280 0.71 -0.6 288,494 + Echvi_0280 0.76 -0.5 288,495 - Echvi_0280 0.76 -0.6 288,495 - Echvi_0280 0.76 -0.2 288,495 - Echvi_0280 0.76 -1.2 288,495 - Echvi_0280 0.76 -2.4 288,496 + Echvi_0280 0.76 -1.3 288,508 - Echvi_0280 0.77 -0.8 288,518 + Echvi_0280 0.77 -0.5 288,618 - Echvi_0280 0.80 -3.1 288,710 + Echvi_0280 0.83 -1.4 288,711 - Echvi_0280 0.83 -0.9 288,844 - Echvi_0280 0.87 -2.9 288,844 - Echvi_0280 0.87 -0.4 288,869 + Echvi_0280 0.88 -1.3 288,989 + +0.6 288,989 + -1.9 288,990 - +0.1 289,010 + -2.3 289,031 + -0.1 289,032 - -1.7 289,161 + -2.5 289,162 - -1.9 289,215 + -0.9 289,215 + -1.3 289,216 - -1.7 289,231 - -2.3 289,244 + -0.5 289,251 + -1.1 289,284 - +0.1 289,290 + +1.2 289,290 + +0.4 289,291 - +0.2 289,322 - -0.4 289,334 + -3.0 289,335 - -0.3 289,387 + -0.5 289,387 + +1.8 289,388 - -2.1 289,388 - -0.7 289,388 - -1.8 289,388 - -0.2 289,432 - -1.6 289,526 + Echvi_0281 0.14 -1.6 289,526 + Echvi_0281 0.14 -2.3 289,530 - Echvi_0281 0.14 -1.2 289,592 + Echvi_0281 0.17 -0.1 289,593 - Echvi_0281 0.18 -2.3 289,593 - Echvi_0281 0.18 +0.1 289,593 - Echvi_0281 0.18 +2.4 289,593 - Echvi_0281 0.18 -1.2 289,593 - Echvi_0281 0.18 -2.8 289,593 - Echvi_0281 0.18 -0.4 289,596 + Echvi_0281 0.18 -1.0 289,596 + Echvi_0281 0.18 -1.6 289,597 - Echvi_0281 0.18 -1.7 289,597 - Echvi_0281 0.18 -1.9 289,597 - Echvi_0281 0.18 -1.9 289,597 - Echvi_0281 0.18 +1.2 289,597 - Echvi_0281 0.18 -1.3 289,597 - Echvi_0281 0.18 -1.0 289,602 + Echvi_0281 0.18 -2.2 289,602 + Echvi_0281 0.18 -1.2 289,602 + Echvi_0281 0.18 -1.1 289,602 + Echvi_0281 0.18 +0.8 289,603 - Echvi_0281 0.18 -0.6 289,603 - Echvi_0281 0.18 -1.0 289,617 - Echvi_0281 0.19 -0.8 289,637 - Echvi_0281 0.20 -0.6 289,637 - Echvi_0281 0.20 -2.0 289,697 + Echvi_0281 0.23 +0.8 289,710 + Echvi_0281 0.24 -0.7 289,731 + Echvi_0281 0.25 -1.2 289,734 + Echvi_0281 0.25 +0.2 289,764 + Echvi_0281 0.27 -1.5 289,785 + Echvi_0281 0.28 -1.4 289,832 - Echvi_0281 0.30 -1.0 289,832 - Echvi_0281 0.30 -0.5 289,895 + Echvi_0281 0.34 -0.8 289,927 + Echvi_0281 0.35 +2.4 289,935 + Echvi_0281 0.36 -0.9 290,022 + Echvi_0281 0.41 -1.6 290,113 + Echvi_0281 0.45 +3.8 290,113 + Echvi_0281 0.45 -1.5 290,151 + Echvi_0281 0.48 -0.6 290,319 + Echvi_0281 0.57 -1.2 290,380 - Echvi_0281 0.60 -0.4 290,558 + Echvi_0281 0.69 -0.3 290,558 + Echvi_0281 0.69 -1.0 290,581 - Echvi_0281 0.71 -0.2 290,583 - Echvi_0281 0.71 -1.7 290,592 + Echvi_0281 0.71 -1.2 290,593 - Echvi_0281 0.71 -0.3 290,625 - Echvi_0281 0.73 -0.2 290,639 + Echvi_0281 0.74 -2.4 290,694 + Echvi_0281 0.77 -1.1 290,695 - Echvi_0281 0.77 -1.4 290,699 - Echvi_0281 0.77 -0.7 290,844 + Echvi_0281 0.85 -0.8 290,845 - Echvi_0281 0.85 +0.7 290,991 + -1.8 290,991 + -1.4 291,014 - -0.9 291,165 + -0.2 291,165 + -0.3 291,166 - -0.9 291,166 - -0.5 291,166 - +0.0 291,187 + +0.6 291,200 + -1.3 291,204 + -0.3 291,223 + +0.7 291,223 + +0.2 291,223 + -0.2 291,223 + +0.5 291,223 + -0.0 291,223 + +0.1 291,224 - -0.3 291,230 - +0.4 291,235 + +0.7 291,235 + -0.2 291,235 + -0.7 291,240 + -1.0 291,240 + -0.7 291,285 + +1.1 291,286 - +0.8 291,292 + +1.2 291,292 + +0.6 291,292 + +1.4 291,293 - -0.5 291,417 - +1.2 291,417 - +2.0 291,486 - -0.6 291,554 - -0.2 291,642 + Echvi_0282 0.12 +0.4 291,644 + Echvi_0282 0.12 +1.4 291,644 + Echvi_0282 0.12 -1.0 291,644 + Echvi_0282 0.12 -0.4 291,644 + Echvi_0282 0.12 +0.3 291,644 + Echvi_0282 0.12 +0.1 291,644 + Echvi_0282 0.12 +0.1 291,645 - Echvi_0282 0.12 +0.6 291,645 - Echvi_0282 0.12 +1.0 291,645 - Echvi_0282 0.12 -1.7 291,654 - Echvi_0282 0.13 -0.7 291,755 + Echvi_0282 0.16 -0.7 291,776 - Echvi_0282 0.16 +0.8 291,957 + Echvi_0282 0.22 +0.4 292,049 + Echvi_0282 0.25 +0.2 292,050 - Echvi_0282 0.25 -0.4 292,050 - Echvi_0282 0.25 -0.8 292,050 - Echvi_0282 0.25 +1.4 292,064 + Echvi_0282 0.25 -0.2 292,064 + Echvi_0282 0.25 -0.8 292,085 + Echvi_0282 0.26 +0.1 292,090 + Echvi_0282 0.26 -0.6 292,090 + Echvi_0282 0.26 +1.0 292,091 - Echvi_0282 0.26 -0.7
Or see this region's nucleotide sequence