Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0280 and Echvi_0281 are separated by 19 nucleotides
Echvi_0280: Echvi_0280 - TonB-linked outer membrane protein, SusC/RagA family, at 286,070 to 289,246
_0280
Echvi_0281: Echvi_0281 - SusD family., at 289,266 to 291,128
_0281
Position (kb) 286
287
288
289
290 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 285.178 kb on + strand at 285.178 kb on + strand at 285.281 kb on + strand at 285.281 kb on + strand at 285.281 kb on + strand at 285.281 kb on + strand at 285.366 kb on + strand at 285.368 kb on + strand at 285.368 kb on + strand at 285.368 kb on + strand at 285.440 kb on + strand at 285.440 kb on + strand at 285.440 kb on + strand at 285.441 kb on - strand at 285.451 kb on - strand at 285.507 kb on + strand at 285.523 kb on - strand at 285.525 kb on - strand at 285.551 kb on + strand at 285.551 kb on + strand at 285.551 kb on + strand at 285.564 kb on + strand at 285.565 kb on - strand at 285.664 kb on + strand at 285.686 kb on + strand at 285.687 kb on - strand at 285.688 kb on + strand at 285.757 kb on + strand at 285.805 kb on - strand at 285.866 kb on + strand at 285.866 kb on + strand at 285.890 kb on + strand at 286.009 kb on + strand at 286.034 kb on + strand at 286.056 kb on + strand at 286.056 kb on + strand at 286.102 kb on + strand at 286.107 kb on + strand at 286.140 kb on + strand at 286.140 kb on + strand at 286.140 kb on + strand at 286.145 kb on + strand at 286.224 kb on + strand at 286.224 kb on + strand at 286.224 kb on + strand at 286.225 kb on - strand at 286.338 kb on + strand at 286.407 kb on + strand, within Echvi_0280 at 286.408 kb on - strand, within Echvi_0280 at 286.410 kb on + strand, within Echvi_0280 at 286.411 kb on - strand, within Echvi_0280 at 286.411 kb on - strand, within Echvi_0280 at 286.411 kb on - strand, within Echvi_0280 at 286.411 kb on - strand, within Echvi_0280 at 286.414 kb on - strand, within Echvi_0280 at 286.414 kb on - strand, within Echvi_0280 at 286.455 kb on + strand, within Echvi_0280 at 286.569 kb on - strand, within Echvi_0280 at 286.601 kb on - strand, within Echvi_0280 at 286.642 kb on + strand, within Echvi_0280 at 286.696 kb on + strand, within Echvi_0280 at 286.730 kb on + strand, within Echvi_0280 at 286.730 kb on + strand, within Echvi_0280 at 286.731 kb on - strand, within Echvi_0280 at 286.834 kb on + strand, within Echvi_0280 at 286.834 kb on + strand, within Echvi_0280 at 286.835 kb on - strand, within Echvi_0280 at 286.869 kb on - strand, within Echvi_0280 at 286.869 kb on - strand, within Echvi_0280 at 286.882 kb on - strand, within Echvi_0280 at 286.957 kb on - strand, within Echvi_0280 at 286.958 kb on + strand, within Echvi_0280 at 286.959 kb on - strand, within Echvi_0280 at 286.960 kb on + strand, within Echvi_0280 at 286.961 kb on - strand, within Echvi_0280 at 286.961 kb on - strand, within Echvi_0280 at 286.996 kb on + strand, within Echvi_0280 at 286.997 kb on - strand, within Echvi_0280 at 287.104 kb on + strand, within Echvi_0280 at 287.104 kb on + strand, within Echvi_0280 at 287.141 kb on + strand, within Echvi_0280 at 287.141 kb on + strand, within Echvi_0280 at 287.142 kb on - strand, within Echvi_0280 at 287.177 kb on + strand, within Echvi_0280 at 287.177 kb on + strand, within Echvi_0280 at 287.178 kb on - strand, within Echvi_0280 at 287.210 kb on + strand, within Echvi_0280 at 287.210 kb on + strand, within Echvi_0280 at 287.211 kb on - strand, within Echvi_0280 at 287.211 kb on - strand, within Echvi_0280 at 287.394 kb on + strand, within Echvi_0280 at 287.394 kb on + strand, within Echvi_0280 at 287.394 kb on + strand, within Echvi_0280 at 287.394 kb on + strand, within Echvi_0280 at 287.462 kb on + strand, within Echvi_0280 at 287.505 kb on + strand, within Echvi_0280 at 287.505 kb on + strand, within Echvi_0280 at 287.560 kb on + strand, within Echvi_0280 at 287.750 kb on - strand, within Echvi_0280 at 287.759 kb on - strand, within Echvi_0280 at 287.819 kb on + strand, within Echvi_0280 at 287.819 kb on + strand, within Echvi_0280 at 287.819 kb on + strand, within Echvi_0280 at 287.820 kb on - strand, within Echvi_0280 at 287.820 kb on - strand, within Echvi_0280 at 287.822 kb on + strand, within Echvi_0280 at 287.822 kb on + strand, within Echvi_0280 at 287.822 kb on + strand, within Echvi_0280 at 287.891 kb on + strand, within Echvi_0280 at 287.891 kb on + strand, within Echvi_0280 at 287.891 kb on + strand, within Echvi_0280 at 287.913 kb on - strand, within Echvi_0280 at 287.932 kb on + strand, within Echvi_0280 at 287.936 kb on + strand, within Echvi_0280 at 287.972 kb on + strand, within Echvi_0280 at 287.972 kb on + strand, within Echvi_0280 at 287.972 kb on + strand, within Echvi_0280 at 287.972 kb on + strand, within Echvi_0280 at 287.973 kb on - strand, within Echvi_0280 at 287.973 kb on - strand, within Echvi_0280 at 287.984 kb on + strand, within Echvi_0280 at 287.984 kb on + strand, within Echvi_0280 at 288.064 kb on + strand, within Echvi_0280 at 288.064 kb on + strand, within Echvi_0280 at 288.106 kb on + strand, within Echvi_0280 at 288.107 kb on - strand, within Echvi_0280 at 288.150 kb on + strand, within Echvi_0280 at 288.150 kb on + strand, within Echvi_0280 at 288.154 kb on - strand, within Echvi_0280 at 288.154 kb on - strand, within Echvi_0280 at 288.162 kb on - strand, within Echvi_0280 at 288.162 kb on - strand, within Echvi_0280 at 288.180 kb on - strand, within Echvi_0280 at 288.180 kb on - strand, within Echvi_0280 at 288.191 kb on - strand, within Echvi_0280 at 288.191 kb on - strand, within Echvi_0280 at 288.191 kb on - strand, within Echvi_0280 at 288.191 kb on - strand, within Echvi_0280 at 288.194 kb on + strand, within Echvi_0280 at 288.248 kb on - strand, within Echvi_0280 at 288.307 kb on - strand, within Echvi_0280 at 288.341 kb on + strand, within Echvi_0280 at 288.494 kb on + strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.495 kb on - strand, within Echvi_0280 at 288.496 kb on + strand, within Echvi_0280 at 288.508 kb on - strand, within Echvi_0280 at 288.518 kb on + strand, within Echvi_0280 at 288.618 kb on - strand, within Echvi_0280 at 288.710 kb on + strand, within Echvi_0280 at 288.711 kb on - strand, within Echvi_0280 at 288.844 kb on - strand, within Echvi_0280 at 288.844 kb on - strand, within Echvi_0280 at 288.869 kb on + strand, within Echvi_0280 at 288.989 kb on + strand at 288.989 kb on + strand at 288.990 kb on - strand at 289.010 kb on + strand at 289.031 kb on + strand at 289.032 kb on - strand at 289.161 kb on + strand at 289.162 kb on - strand at 289.215 kb on + strand at 289.215 kb on + strand at 289.216 kb on - strand at 289.231 kb on - strand at 289.244 kb on + strand at 289.251 kb on + strand at 289.284 kb on - strand at 289.290 kb on + strand at 289.290 kb on + strand at 289.291 kb on - strand at 289.322 kb on - strand at 289.334 kb on + strand at 289.335 kb on - strand at 289.387 kb on + strand at 289.387 kb on + strand at 289.388 kb on - strand at 289.388 kb on - strand at 289.388 kb on - strand at 289.388 kb on - strand at 289.432 kb on - strand at 289.526 kb on + strand, within Echvi_0281 at 289.526 kb on + strand, within Echvi_0281 at 289.530 kb on - strand, within Echvi_0281 at 289.592 kb on + strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.593 kb on - strand, within Echvi_0281 at 289.596 kb on + strand, within Echvi_0281 at 289.596 kb on + strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.597 kb on - strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.602 kb on + strand, within Echvi_0281 at 289.603 kb on - strand, within Echvi_0281 at 289.603 kb on - strand, within Echvi_0281 at 289.617 kb on - strand, within Echvi_0281 at 289.637 kb on - strand, within Echvi_0281 at 289.637 kb on - strand, within Echvi_0281 at 289.697 kb on + strand, within Echvi_0281 at 289.710 kb on + strand, within Echvi_0281 at 289.731 kb on + strand, within Echvi_0281 at 289.734 kb on + strand, within Echvi_0281 at 289.764 kb on + strand, within Echvi_0281 at 289.785 kb on + strand, within Echvi_0281 at 289.832 kb on - strand, within Echvi_0281 at 289.832 kb on - strand, within Echvi_0281 at 289.895 kb on + strand, within Echvi_0281 at 289.927 kb on + strand, within Echvi_0281 at 289.935 kb on + strand, within Echvi_0281 at 290.022 kb on + strand, within Echvi_0281 at 290.113 kb on + strand, within Echvi_0281 at 290.113 kb on + strand, within Echvi_0281 at 290.151 kb on + strand, within Echvi_0281
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 285,178 + +1.4 285,178 + +1.3 285,281 + -0.4 285,281 + -0.9 285,281 + +0.3 285,281 + -0.2 285,366 + +0.6 285,368 + -0.5 285,368 + +0.6 285,368 + +1.4 285,440 + +0.4 285,440 + +0.7 285,440 + -0.0 285,441 - +0.8 285,451 - -1.6 285,507 + -0.5 285,523 - -0.2 285,525 - -0.2 285,551 + +0.2 285,551 + +0.4 285,551 + +1.4 285,564 + +0.3 285,565 - +0.7 285,664 + +0.1 285,686 + -0.2 285,687 - +2.7 285,688 + +2.3 285,757 + +1.0 285,805 - -0.4 285,866 + +0.6 285,866 + +0.5 285,890 + +0.7 286,009 + +0.0 286,034 + +0.1 286,056 + +0.3 286,056 + -0.3 286,102 + -1.5 286,107 + +1.4 286,140 + -3.3 286,140 + -1.8 286,140 + -1.7 286,145 + -1.8 286,224 + -0.5 286,224 + -1.1 286,224 + -0.8 286,225 - -1.7 286,338 + -0.2 286,407 + Echvi_0280 0.11 -0.0 286,408 - Echvi_0280 0.11 -2.3 286,410 + Echvi_0280 0.11 -1.3 286,411 - Echvi_0280 0.11 -0.9 286,411 - Echvi_0280 0.11 -0.9 286,411 - Echvi_0280 0.11 -3.7 286,411 - Echvi_0280 0.11 +0.4 286,414 - Echvi_0280 0.11 -2.9 286,414 - Echvi_0280 0.11 -0.8 286,455 + Echvi_0280 0.12 -1.5 286,569 - Echvi_0280 0.16 -1.9 286,601 - Echvi_0280 0.17 -2.0 286,642 + Echvi_0280 0.18 -0.0 286,696 + Echvi_0280 0.20 -2.4 286,730 + Echvi_0280 0.21 -1.0 286,730 + Echvi_0280 0.21 -3.5 286,731 - Echvi_0280 0.21 -0.3 286,834 + Echvi_0280 0.24 -1.9 286,834 + Echvi_0280 0.24 -0.2 286,835 - Echvi_0280 0.24 -0.6 286,869 - Echvi_0280 0.25 -1.0 286,869 - Echvi_0280 0.25 -2.5 286,882 - Echvi_0280 0.26 -0.2 286,957 - Echvi_0280 0.28 -2.0 286,958 + Echvi_0280 0.28 -1.8 286,959 - Echvi_0280 0.28 -2.0 286,960 + Echvi_0280 0.28 -0.7 286,961 - Echvi_0280 0.28 -2.2 286,961 - Echvi_0280 0.28 -1.9 286,996 + Echvi_0280 0.29 -1.2 286,997 - Echvi_0280 0.29 -0.3 287,104 + Echvi_0280 0.33 -2.0 287,104 + Echvi_0280 0.33 -1.6 287,141 + Echvi_0280 0.34 +3.4 287,141 + Echvi_0280 0.34 -2.0 287,142 - Echvi_0280 0.34 -1.8 287,177 + Echvi_0280 0.35 -1.7 287,177 + Echvi_0280 0.35 -0.2 287,178 - Echvi_0280 0.35 -1.6 287,210 + Echvi_0280 0.36 -3.1 287,210 + Echvi_0280 0.36 -0.8 287,211 - Echvi_0280 0.36 +1.4 287,211 - Echvi_0280 0.36 -1.2 287,394 + Echvi_0280 0.42 -2.4 287,394 + Echvi_0280 0.42 -1.4 287,394 + Echvi_0280 0.42 -3.8 287,394 + Echvi_0280 0.42 -1.9 287,462 + Echvi_0280 0.44 +1.4 287,505 + Echvi_0280 0.45 -2.4 287,505 + Echvi_0280 0.45 -2.8 287,560 + Echvi_0280 0.47 -3.0 287,750 - Echvi_0280 0.53 -2.5 287,759 - Echvi_0280 0.53 -0.4 287,819 + Echvi_0280 0.55 -1.0 287,819 + Echvi_0280 0.55 +0.2 287,819 + Echvi_0280 0.55 -0.2 287,820 - Echvi_0280 0.55 +0.8 287,820 - Echvi_0280 0.55 -0.6 287,822 + Echvi_0280 0.55 +1.1 287,822 + Echvi_0280 0.55 -0.9 287,822 + Echvi_0280 0.55 -1.8 287,891 + Echvi_0280 0.57 -1.3 287,891 + Echvi_0280 0.57 -1.6 287,891 + Echvi_0280 0.57 +1.2 287,913 - Echvi_0280 0.58 -1.7 287,932 + Echvi_0280 0.59 -0.6 287,936 + Echvi_0280 0.59 +0.6 287,972 + Echvi_0280 0.60 -1.9 287,972 + Echvi_0280 0.60 -2.1 287,972 + Echvi_0280 0.60 -1.0 287,972 + Echvi_0280 0.60 -2.1 287,973 - Echvi_0280 0.60 -3.4 287,973 - Echvi_0280 0.60 -2.2 287,984 + Echvi_0280 0.60 -1.7 287,984 + Echvi_0280 0.60 +1.4 288,064 + Echvi_0280 0.63 -0.8 288,064 + Echvi_0280 0.63 -0.9 288,106 + Echvi_0280 0.64 -0.5 288,107 - Echvi_0280 0.64 -3.1 288,150 + Echvi_0280 0.65 -0.4 288,150 + Echvi_0280 0.65 -1.6 288,154 - Echvi_0280 0.66 -2.7 288,154 - Echvi_0280 0.66 -2.3 288,162 - Echvi_0280 0.66 -0.0 288,162 - Echvi_0280 0.66 +0.4 288,180 - Echvi_0280 0.66 -2.2 288,180 - Echvi_0280 0.66 -0.0 288,191 - Echvi_0280 0.67 -1.6 288,191 - Echvi_0280 0.67 -1.0 288,191 - Echvi_0280 0.67 -0.6 288,191 - Echvi_0280 0.67 -1.2 288,194 + Echvi_0280 0.67 -1.9 288,248 - Echvi_0280 0.69 -2.7 288,307 - Echvi_0280 0.70 -1.2 288,341 + Echvi_0280 0.71 -0.6 288,494 + Echvi_0280 0.76 -0.5 288,495 - Echvi_0280 0.76 -0.6 288,495 - Echvi_0280 0.76 -0.2 288,495 - Echvi_0280 0.76 -1.2 288,495 - Echvi_0280 0.76 -2.4 288,496 + Echvi_0280 0.76 -1.3 288,508 - Echvi_0280 0.77 -0.8 288,518 + Echvi_0280 0.77 -0.5 288,618 - Echvi_0280 0.80 -3.1 288,710 + Echvi_0280 0.83 -1.4 288,711 - Echvi_0280 0.83 -0.9 288,844 - Echvi_0280 0.87 -2.9 288,844 - Echvi_0280 0.87 -0.4 288,869 + Echvi_0280 0.88 -1.3 288,989 + +0.6 288,989 + -1.9 288,990 - +0.1 289,010 + -2.3 289,031 + -0.1 289,032 - -1.7 289,161 + -2.5 289,162 - -1.9 289,215 + -0.9 289,215 + -1.3 289,216 - -1.7 289,231 - -2.3 289,244 + -0.5 289,251 + -1.1 289,284 - +0.1 289,290 + +1.2 289,290 + +0.4 289,291 - +0.2 289,322 - -0.4 289,334 + -3.0 289,335 - -0.3 289,387 + -0.5 289,387 + +1.8 289,388 - -2.1 289,388 - -0.7 289,388 - -1.8 289,388 - -0.2 289,432 - -1.6 289,526 + Echvi_0281 0.14 -1.6 289,526 + Echvi_0281 0.14 -2.3 289,530 - Echvi_0281 0.14 -1.2 289,592 + Echvi_0281 0.17 -0.1 289,593 - Echvi_0281 0.18 -2.3 289,593 - Echvi_0281 0.18 +0.1 289,593 - Echvi_0281 0.18 +2.4 289,593 - Echvi_0281 0.18 -1.2 289,593 - Echvi_0281 0.18 -2.8 289,593 - Echvi_0281 0.18 -0.4 289,596 + Echvi_0281 0.18 -1.0 289,596 + Echvi_0281 0.18 -1.6 289,597 - Echvi_0281 0.18 -1.7 289,597 - Echvi_0281 0.18 -1.9 289,597 - Echvi_0281 0.18 -1.9 289,597 - Echvi_0281 0.18 +1.2 289,597 - Echvi_0281 0.18 -1.3 289,597 - Echvi_0281 0.18 -1.0 289,602 + Echvi_0281 0.18 -2.2 289,602 + Echvi_0281 0.18 -1.2 289,602 + Echvi_0281 0.18 -1.1 289,602 + Echvi_0281 0.18 +0.8 289,603 - Echvi_0281 0.18 -0.6 289,603 - Echvi_0281 0.18 -1.0 289,617 - Echvi_0281 0.19 -0.8 289,637 - Echvi_0281 0.20 -0.6 289,637 - Echvi_0281 0.20 -2.0 289,697 + Echvi_0281 0.23 +0.8 289,710 + Echvi_0281 0.24 -0.7 289,731 + Echvi_0281 0.25 -1.2 289,734 + Echvi_0281 0.25 +0.2 289,764 + Echvi_0281 0.27 -1.5 289,785 + Echvi_0281 0.28 -1.4 289,832 - Echvi_0281 0.30 -1.0 289,832 - Echvi_0281 0.30 -0.5 289,895 + Echvi_0281 0.34 -0.8 289,927 + Echvi_0281 0.35 +2.4 289,935 + Echvi_0281 0.36 -0.9 290,022 + Echvi_0281 0.41 -1.6 290,113 + Echvi_0281 0.45 +3.8 290,113 + Echvi_0281 0.45 -1.5 290,151 + Echvi_0281 0.48 -0.6
Or see this region's nucleotide sequence