Strain Fitness in Agrobacterium fabrum C58 around Atu3550

Experiment: R2A with tungstate 375 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3549 and Atu3550 overlap by 8 nucleotidesAtu3550 and Atu3551 are separated by 161 nucleotides Atu3549: Atu3549 - hypothetical protein, at 598,985 to 600,322 Atu3549 Atu3550: Atu3550 - succinoglycan transport protein, at 600,315 to 601,793 Atu3550 Atu3551: Atu3551 - glycosyltransferase, at 601,955 to 603,190 Atu3551 Position (kb) 600 601 602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 599.323 kb on - strand, within Atu3549at 599.323 kb on - strand, within Atu3549at 599.328 kb on - strand, within Atu3549at 599.333 kb on - strand, within Atu3549at 599.357 kb on - strand, within Atu3549at 599.358 kb on - strand, within Atu3549at 599.358 kb on - strand, within Atu3549at 599.368 kb on - strand, within Atu3549at 599.375 kb on - strand, within Atu3549at 599.386 kb on - strand, within Atu3549at 599.535 kb on + strand, within Atu3549at 599.535 kb on + strand, within Atu3549at 599.535 kb on + strand, within Atu3549at 599.535 kb on + strand, within Atu3549at 599.543 kb on - strand, within Atu3549at 599.543 kb on - strand, within Atu3549at 599.557 kb on + strand, within Atu3549at 599.557 kb on + strand, within Atu3549at 599.565 kb on - strand, within Atu3549at 599.584 kb on - strand, within Atu3549at 599.609 kb on - strand, within Atu3549at 599.609 kb on - strand, within Atu3549at 599.609 kb on - strand, within Atu3549at 599.609 kb on - strand, within Atu3549at 599.734 kb on + strand, within Atu3549at 599.751 kb on + strand, within Atu3549at 599.751 kb on + strand, within Atu3549at 599.759 kb on - strand, within Atu3549at 599.759 kb on - strand, within Atu3549at 599.781 kb on - strand, within Atu3549at 599.888 kb on + strand, within Atu3549at 599.931 kb on + strand, within Atu3549at 599.990 kb on + strand, within Atu3549at 600.013 kb on + strand, within Atu3549at 600.030 kb on + strand, within Atu3549at 600.368 kb on - strandat 600.426 kb on + strandat 600.526 kb on - strand, within Atu3550at 600.615 kb on + strand, within Atu3550at 600.696 kb on + strand, within Atu3550at 600.696 kb on + strand, within Atu3550at 600.730 kb on + strand, within Atu3550at 600.784 kb on + strand, within Atu3550at 600.823 kb on - strand, within Atu3550at 600.850 kb on + strand, within Atu3550at 600.887 kb on + strand, within Atu3550at 600.900 kb on - strand, within Atu3550at 600.900 kb on - strand, within Atu3550at 600.943 kb on - strand, within Atu3550at 600.956 kb on + strand, within Atu3550at 600.969 kb on + strand, within Atu3550at 600.990 kb on + strand, within Atu3550at 601.053 kb on - strand, within Atu3550at 601.079 kb on + strand, within Atu3550at 601.128 kb on + strand, within Atu3550at 601.142 kb on - strand, within Atu3550at 601.166 kb on + strand, within Atu3550at 601.174 kb on - strand, within Atu3550at 601.194 kb on + strand, within Atu3550at 601.195 kb on - strand, within Atu3550at 601.222 kb on + strand, within Atu3550at 601.269 kb on + strand, within Atu3550at 601.277 kb on - strand, within Atu3550at 601.363 kb on - strand, within Atu3550at 601.402 kb on + strand, within Atu3550at 601.440 kb on + strand, within Atu3550at 601.501 kb on + strand, within Atu3550at 601.562 kb on + strand, within Atu3550at 601.570 kb on - strand, within Atu3550at 601.708 kb on - strandat 601.728 kb on + strandat 601.728 kb on + strandat 601.736 kb on - strandat 601.755 kb on + strandat 601.768 kb on - strandat 601.826 kb on + strandat 601.834 kb on - strandat 601.894 kb on - strandat 601.960 kb on - strandat 601.960 kb on - strandat 601.960 kb on - strandat 601.960 kb on - strandat 601.977 kb on - strandat 601.980 kb on + strandat 602.099 kb on - strand, within Atu3551at 602.110 kb on - strand, within Atu3551at 602.162 kb on + strand, within Atu3551at 602.196 kb on - strand, within Atu3551at 602.239 kb on - strand, within Atu3551at 602.268 kb on + strand, within Atu3551at 602.484 kb on + strand, within Atu3551at 602.492 kb on - strand, within Atu3551at 602.560 kb on - strand, within Atu3551at 602.593 kb on - strand, within Atu3551at 602.678 kb on - strand, within Atu3551at 602.707 kb on + strand, within Atu3551at 602.753 kb on - strand, within Atu3551at 602.753 kb on - strand, within Atu3551at 602.776 kb on + strand, within Atu3551

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with tungstate 375 mM
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599,323 - Atu3549 0.25 +0.1
599,323 - Atu3549 0.25 -1.4
599,328 - Atu3549 0.26 -1.5
599,333 - Atu3549 0.26 +1.1
599,357 - Atu3549 0.28 +1.3
599,358 - Atu3549 0.28 +0.1
599,358 - Atu3549 0.28 +1.4
599,368 - Atu3549 0.29 -0.2
599,375 - Atu3549 0.29 +0.0
599,386 - Atu3549 0.30 -0.3
599,535 + Atu3549 0.41 -0.3
599,535 + Atu3549 0.41 +0.3
599,535 + Atu3549 0.41 -1.7
599,535 + Atu3549 0.41 -0.9
599,543 - Atu3549 0.42 -0.5
599,543 - Atu3549 0.42 +1.0
599,557 + Atu3549 0.43 -0.9
599,557 + Atu3549 0.43 +0.8
599,565 - Atu3549 0.43 -1.6
599,584 - Atu3549 0.45 -0.3
599,609 - Atu3549 0.47 -1.0
599,609 - Atu3549 0.47 -2.2
599,609 - Atu3549 0.47 +0.4
599,609 - Atu3549 0.47 +0.2
599,734 + Atu3549 0.56 +0.3
599,751 + Atu3549 0.57 +1.9
599,751 + Atu3549 0.57 -0.1
599,759 - Atu3549 0.58 +1.0
599,759 - Atu3549 0.58 -0.2
599,781 - Atu3549 0.59 -0.7
599,888 + Atu3549 0.67 +1.1
599,931 + Atu3549 0.71 +0.4
599,990 + Atu3549 0.75 -0.1
600,013 + Atu3549 0.77 -0.6
600,030 + Atu3549 0.78 +0.1
600,368 - -0.2
600,426 + -0.0
600,526 - Atu3550 0.14 -4.3
600,615 + Atu3550 0.20 -1.2
600,696 + Atu3550 0.26 -2.4
600,696 + Atu3550 0.26 -1.1
600,730 + Atu3550 0.28 +0.4
600,784 + Atu3550 0.32 -0.1
600,823 - Atu3550 0.34 -2.3
600,850 + Atu3550 0.36 +0.6
600,887 + Atu3550 0.39 -1.3
600,900 - Atu3550 0.40 -0.3
600,900 - Atu3550 0.40 -0.9
600,943 - Atu3550 0.42 +0.4
600,956 + Atu3550 0.43 -1.0
600,969 + Atu3550 0.44 -0.0
600,990 + Atu3550 0.46 -1.3
601,053 - Atu3550 0.50 -0.5
601,079 + Atu3550 0.52 +0.1
601,128 + Atu3550 0.55 +1.3
601,142 - Atu3550 0.56 -0.1
601,166 + Atu3550 0.58 -0.3
601,174 - Atu3550 0.58 +0.9
601,194 + Atu3550 0.59 -0.3
601,195 - Atu3550 0.59 -0.4
601,222 + Atu3550 0.61 -2.6
601,269 + Atu3550 0.65 -0.4
601,277 - Atu3550 0.65 +0.3
601,363 - Atu3550 0.71 -1.5
601,402 + Atu3550 0.73 -1.7
601,440 + Atu3550 0.76 +0.5
601,501 + Atu3550 0.80 -0.5
601,562 + Atu3550 0.84 +0.7
601,570 - Atu3550 0.85 +1.3
601,708 - +0.6
601,728 + -1.1
601,728 + -0.3
601,736 - -2.9
601,755 + +1.4
601,768 - +1.7
601,826 + -0.1
601,834 - +0.3
601,894 - +0.9
601,960 - -0.7
601,960 - -0.8
601,960 - -0.6
601,960 - +0.1
601,977 - +0.2
601,980 + -0.3
602,099 - Atu3551 0.12 +1.7
602,110 - Atu3551 0.13 -1.6
602,162 + Atu3551 0.17 -0.3
602,196 - Atu3551 0.19 +0.7
602,239 - Atu3551 0.23 +1.0
602,268 + Atu3551 0.25 -1.3
602,484 + Atu3551 0.43 +1.1
602,492 - Atu3551 0.43 -0.3
602,560 - Atu3551 0.49 -1.3
602,593 - Atu3551 0.52 -2.2
602,678 - Atu3551 0.58 -1.0
602,707 + Atu3551 0.61 -0.5
602,753 - Atu3551 0.65 +0.3
602,753 - Atu3551 0.65 +0.3
602,776 + Atu3551 0.66 -0.6

Or see this region's nucleotide sequence