Experiment: R2A with tungstate 375 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3410 and Atu3411 overlap by 1 nucleotides Atu3411 and Atu3412 overlap by 1 nucleotides Atu3412 and Atu3413 are separated by 186 nucleotides Atu3413 and Atu3414 are separated by 230 nucleotides
Atu3410: Atu3410 - ABC transporter permease, at 456,490 to 457,440
Atu3410
Atu3411: Atu3411 - ABC transporter permease, at 457,440 to 458,291
Atu3411
Atu3412: Atu3412 - ABC transporter permease, at 458,291 to 459,946
Atu3412
Atu3413: Atu3413 - AsnC family transcriptional regulator, at 460,133 to 460,609
Atu3413
Atu3414: Atu3414 - AgaE protein, at 460,840 to 462,165
Atu3414
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 457.344 kb on + strand, within Atu3410 at 457.353 kb on - strand at 457.353 kb on - strand at 457.407 kb on - strand at 457.407 kb on - strand at 457.524 kb on + strand at 457.557 kb on + strand, within Atu3411 at 457.727 kb on - strand, within Atu3411 at 457.911 kb on - strand, within Atu3411 at 457.942 kb on + strand, within Atu3411 at 458.022 kb on - strand, within Atu3411 at 458.041 kb on + strand, within Atu3411 at 458.041 kb on + strand, within Atu3411 at 458.113 kb on + strand, within Atu3411 at 458.113 kb on + strand, within Atu3411 at 458.148 kb on + strand, within Atu3411 at 458.185 kb on - strand, within Atu3411 at 458.370 kb on - strand at 458.400 kb on - strand at 458.415 kb on + strand at 458.544 kb on + strand, within Atu3412 at 458.576 kb on + strand, within Atu3412 at 458.597 kb on + strand, within Atu3412 at 458.606 kb on - strand, within Atu3412 at 458.629 kb on + strand, within Atu3412 at 458.629 kb on + strand, within Atu3412 at 458.637 kb on - strand, within Atu3412 at 458.638 kb on - strand, within Atu3412 at 458.688 kb on + strand, within Atu3412 at 458.698 kb on + strand, within Atu3412 at 458.698 kb on + strand, within Atu3412 at 458.706 kb on - strand, within Atu3412 at 458.706 kb on - strand, within Atu3412 at 458.706 kb on - strand, within Atu3412 at 458.706 kb on - strand, within Atu3412 at 458.826 kb on - strand, within Atu3412 at 458.826 kb on - strand, within Atu3412 at 458.982 kb on - strand, within Atu3412 at 458.982 kb on - strand, within Atu3412 at 459.076 kb on + strand, within Atu3412 at 459.076 kb on + strand, within Atu3412 at 459.076 kb on + strand, within Atu3412 at 459.084 kb on - strand, within Atu3412 at 459.084 kb on - strand, within Atu3412 at 459.084 kb on - strand, within Atu3412 at 459.084 kb on - strand, within Atu3412 at 459.116 kb on - strand, within Atu3412 at 459.147 kb on - strand, within Atu3412 at 459.224 kb on - strand, within Atu3412 at 459.319 kb on - strand, within Atu3412 at 459.493 kb on + strand, within Atu3412 at 459.537 kb on + strand, within Atu3412 at 459.573 kb on + strand, within Atu3412 at 459.581 kb on - strand, within Atu3412 at 459.581 kb on - strand, within Atu3412 at 459.707 kb on + strand, within Atu3412 at 459.715 kb on - strand, within Atu3412 at 459.784 kb on - strand at 459.922 kb on + strand at 459.930 kb on - strand at 459.991 kb on + strand at 459.999 kb on - strand at 460.289 kb on - strand, within Atu3413 at 460.431 kb on - strand, within Atu3413 at 460.484 kb on - strand, within Atu3413 at 460.519 kb on - strand, within Atu3413 at 460.537 kb on + strand, within Atu3413 at 460.734 kb on - strand at 460.741 kb on - strand at 460.763 kb on - strand at 460.772 kb on + strand at 460.831 kb on - strand at 460.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with tungstate 375 mM remove 457,344 + Atu3410 0.90 -0.3 457,353 - +0.2 457,353 - -0.7 457,407 - -0.0 457,407 - +0.0 457,524 + +0.8 457,557 + Atu3411 0.14 +0.2 457,727 - Atu3411 0.34 +0.5 457,911 - Atu3411 0.55 +0.6 457,942 + Atu3411 0.59 +0.1 458,022 - Atu3411 0.68 -0.0 458,041 + Atu3411 0.71 +0.2 458,041 + Atu3411 0.71 +0.0 458,113 + Atu3411 0.79 -0.5 458,113 + Atu3411 0.79 +0.6 458,148 + Atu3411 0.83 +0.4 458,185 - Atu3411 0.87 -1.1 458,370 - +0.6 458,400 - +0.4 458,415 + +0.8 458,544 + Atu3412 0.15 +0.4 458,576 + Atu3412 0.17 -0.2 458,597 + Atu3412 0.18 +0.1 458,606 - Atu3412 0.19 -1.5 458,629 + Atu3412 0.20 +0.1 458,629 + Atu3412 0.20 -0.5 458,637 - Atu3412 0.21 +0.8 458,638 - Atu3412 0.21 -1.9 458,688 + Atu3412 0.24 -0.8 458,698 + Atu3412 0.25 -0.2 458,698 + Atu3412 0.25 -1.2 458,706 - Atu3412 0.25 -0.8 458,706 - Atu3412 0.25 +0.9 458,706 - Atu3412 0.25 +0.8 458,706 - Atu3412 0.25 +0.6 458,826 - Atu3412 0.32 -1.3 458,826 - Atu3412 0.32 +0.4 458,982 - Atu3412 0.42 -0.6 458,982 - Atu3412 0.42 -0.1 459,076 + Atu3412 0.47 +0.4 459,076 + Atu3412 0.47 -1.1 459,076 + Atu3412 0.47 -0.0 459,084 - Atu3412 0.48 -0.5 459,084 - Atu3412 0.48 -0.6 459,084 - Atu3412 0.48 -1.6 459,084 - Atu3412 0.48 -0.2 459,116 - Atu3412 0.50 -1.4 459,147 - Atu3412 0.52 -0.2 459,224 - Atu3412 0.56 -1.9 459,319 - Atu3412 0.62 -0.3 459,493 + Atu3412 0.73 -0.9 459,537 + Atu3412 0.75 -0.1 459,573 + Atu3412 0.77 +0.1 459,581 - Atu3412 0.78 -2.3 459,581 - Atu3412 0.78 -1.2 459,707 + Atu3412 0.86 +0.5 459,715 - Atu3412 0.86 +0.1 459,784 - -0.5 459,922 + -2.4 459,930 - -0.5 459,991 + -0.1 459,999 - +1.7 460,289 - Atu3413 0.33 -0.3 460,431 - Atu3413 0.62 +0.8 460,484 - Atu3413 0.74 +0.2 460,519 - Atu3413 0.81 -1.1 460,537 + Atu3413 0.85 -2.8 460,734 - -1.5 460,741 - +0.6 460,763 - -0.1 460,772 + -1.6 460,831 - +2.0 460,844 - +1.6
Or see this region's nucleotide sequence