Experiment: R2A with tungstate 375 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3383 and Atu3384 are separated by 14 nucleotides Atu3384 and Atu3385 are separated by 103 nucleotides Atu3385 and Atu3386 are separated by 149 nucleotides
Atu3383: Atu3383 - rhizobicin secretion, at 424,921 to 426,768
Atu3383
Atu3384: Atu3384 - hypothetical protein, at 426,783 to 427,538
Atu3384
Atu3385: Atu3385 - heme receptor, at 427,642 to 430,413
Atu3385
Atu3386: Atu3386 - two component sensor kinase, at 430,563 to 431,558
Atu3386
Position (kb) 427
428
429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 426.656 kb on + strand at 426.676 kb on - strand at 426.890 kb on + strand, within Atu3384 at 426.986 kb on - strand, within Atu3384 at 427.037 kb on + strand, within Atu3384 at 427.045 kb on - strand, within Atu3384 at 427.070 kb on + strand, within Atu3384 at 427.278 kb on + strand, within Atu3384 at 427.321 kb on + strand, within Atu3384 at 427.418 kb on + strand, within Atu3384 at 427.421 kb on - strand, within Atu3384 at 427.428 kb on + strand, within Atu3384 at 427.446 kb on - strand, within Atu3384 at 427.450 kb on + strand, within Atu3384 at 427.458 kb on - strand, within Atu3384 at 427.499 kb on + strand at 427.504 kb on + strand at 427.533 kb on + strand at 427.541 kb on + strand at 427.548 kb on - strand at 427.556 kb on + strand at 427.556 kb on + strand at 427.564 kb on - strand at 427.578 kb on - strand at 427.648 kb on - strand at 427.775 kb on + strand at 427.778 kb on + strand at 427.851 kb on + strand at 427.859 kb on - strand at 427.875 kb on - strand at 428.101 kb on + strand, within Atu3385 at 428.109 kb on - strand, within Atu3385 at 428.109 kb on - strand, within Atu3385 at 428.134 kb on + strand, within Atu3385 at 428.152 kb on + strand, within Atu3385 at 428.183 kb on + strand, within Atu3385 at 428.191 kb on - strand, within Atu3385 at 428.197 kb on - strand, within Atu3385 at 428.202 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.231 kb on + strand, within Atu3385 at 428.237 kb on - strand, within Atu3385 at 428.513 kb on - strand, within Atu3385 at 428.520 kb on + strand, within Atu3385 at 428.768 kb on + strand, within Atu3385 at 428.773 kb on + strand, within Atu3385 at 428.778 kb on + strand, within Atu3385 at 428.856 kb on - strand, within Atu3385 at 428.899 kb on - strand, within Atu3385 at 428.946 kb on - strand, within Atu3385 at 429.003 kb on + strand, within Atu3385 at 429.034 kb on + strand, within Atu3385 at 429.136 kb on + strand, within Atu3385 at 429.191 kb on + strand, within Atu3385 at 429.191 kb on + strand, within Atu3385 at 429.246 kb on - strand, within Atu3385 at 429.325 kb on + strand, within Atu3385 at 429.325 kb on + strand, within Atu3385 at 429.333 kb on - strand, within Atu3385 at 429.333 kb on - strand, within Atu3385 at 429.333 kb on - strand, within Atu3385 at 429.376 kb on + strand, within Atu3385 at 429.376 kb on + strand, within Atu3385 at 429.384 kb on - strand, within Atu3385 at 429.384 kb on - strand, within Atu3385 at 429.470 kb on + strand, within Atu3385 at 429.540 kb on - strand, within Atu3385 at 429.631 kb on - strand, within Atu3385 at 429.751 kb on + strand, within Atu3385 at 429.905 kb on - strand, within Atu3385 at 430.009 kb on + strand, within Atu3385 at 430.032 kb on + strand, within Atu3385 at 430.040 kb on - strand, within Atu3385 at 430.040 kb on - strand, within Atu3385 at 430.129 kb on + strand, within Atu3385 at 430.297 kb on + strand at 430.569 kb on - strand at 430.640 kb on - strand at 430.651 kb on + strand at 430.654 kb on - strand at 430.710 kb on + strand, within Atu3386 at 430.732 kb on + strand, within Atu3386 at 430.732 kb on + strand, within Atu3386 at 430.740 kb on - strand, within Atu3386 at 430.775 kb on - strand, within Atu3386 at 430.826 kb on - strand, within Atu3386 at 430.917 kb on + strand, within Atu3386 at 431.058 kb on + strand, within Atu3386 at 431.074 kb on - strand, within Atu3386 at 431.134 kb on - strand, within Atu3386 at 431.188 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.225 kb on + strand, within Atu3386 at 431.233 kb on - strand, within Atu3386 at 431.233 kb on - strand, within Atu3386
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with tungstate 375 mM remove 426,656 + +0.6 426,676 - -0.5 426,890 + Atu3384 0.14 -0.7 426,986 - Atu3384 0.27 +0.6 427,037 + Atu3384 0.34 +0.2 427,045 - Atu3384 0.35 -0.3 427,070 + Atu3384 0.38 -0.7 427,278 + Atu3384 0.65 -0.1 427,321 + Atu3384 0.71 +0.7 427,418 + Atu3384 0.84 -0.7 427,421 - Atu3384 0.84 -0.3 427,428 + Atu3384 0.85 -2.3 427,446 - Atu3384 0.88 +1.3 427,450 + Atu3384 0.88 -0.3 427,458 - Atu3384 0.89 -1.0 427,499 + -0.4 427,504 + -0.1 427,533 + -0.2 427,541 + -1.8 427,548 - -0.4 427,556 + +0.0 427,556 + +0.2 427,564 - +0.2 427,578 - +0.0 427,648 - +0.6 427,775 + -0.3 427,778 + -1.9 427,851 + +1.1 427,859 - -3.0 427,875 - +0.7 428,101 + Atu3385 0.17 +0.1 428,109 - Atu3385 0.17 -0.4 428,109 - Atu3385 0.17 -1.9 428,134 + Atu3385 0.18 -0.3 428,152 + Atu3385 0.18 -2.2 428,183 + Atu3385 0.20 -1.7 428,191 - Atu3385 0.20 +0.7 428,197 - Atu3385 0.20 -0.7 428,202 + Atu3385 0.20 -0.8 428,229 + Atu3385 0.21 +0.5 428,229 + Atu3385 0.21 -0.9 428,229 + Atu3385 0.21 +0.2 428,229 + Atu3385 0.21 -0.3 428,231 + Atu3385 0.21 -0.4 428,237 - Atu3385 0.21 -1.0 428,513 - Atu3385 0.31 +0.1 428,520 + Atu3385 0.32 +0.5 428,768 + Atu3385 0.41 -0.5 428,773 + Atu3385 0.41 -1.2 428,778 + Atu3385 0.41 -1.7 428,856 - Atu3385 0.44 -0.5 428,899 - Atu3385 0.45 +0.0 428,946 - Atu3385 0.47 -1.8 429,003 + Atu3385 0.49 +0.4 429,034 + Atu3385 0.50 -0.6 429,136 + Atu3385 0.54 +0.1 429,191 + Atu3385 0.56 +0.4 429,191 + Atu3385 0.56 -0.3 429,246 - Atu3385 0.58 -0.6 429,325 + Atu3385 0.61 +0.8 429,325 + Atu3385 0.61 -0.8 429,333 - Atu3385 0.61 +0.0 429,333 - Atu3385 0.61 -0.3 429,333 - Atu3385 0.61 -0.9 429,376 + Atu3385 0.63 -2.4 429,376 + Atu3385 0.63 +0.5 429,384 - Atu3385 0.63 +0.7 429,384 - Atu3385 0.63 +0.0 429,470 + Atu3385 0.66 -0.6 429,540 - Atu3385 0.68 +0.6 429,631 - Atu3385 0.72 +0.0 429,751 + Atu3385 0.76 +0.1 429,905 - Atu3385 0.82 -0.7 430,009 + Atu3385 0.85 +0.3 430,032 + Atu3385 0.86 +3.0 430,040 - Atu3385 0.87 -0.2 430,040 - Atu3385 0.87 -1.1 430,129 + Atu3385 0.90 +0.9 430,297 + -0.6 430,569 - -1.2 430,640 - -0.0 430,651 + +0.2 430,654 - +0.5 430,710 + Atu3386 0.15 -1.3 430,732 + Atu3386 0.17 -0.8 430,732 + Atu3386 0.17 +0.9 430,740 - Atu3386 0.18 +0.5 430,775 - Atu3386 0.21 -1.2 430,826 - Atu3386 0.26 +0.7 430,917 + Atu3386 0.36 +1.2 431,058 + Atu3386 0.50 -0.8 431,074 - Atu3386 0.51 +0.4 431,134 - Atu3386 0.57 +1.7 431,188 + Atu3386 0.63 -0.2 431,225 + Atu3386 0.66 +0.2 431,225 + Atu3386 0.66 -0.5 431,225 + Atu3386 0.66 +0.4 431,225 + Atu3386 0.66 -0.0 431,225 + Atu3386 0.66 +0.0 431,233 - Atu3386 0.67 -0.7 431,233 - Atu3386 0.67 +0.5
Or see this region's nucleotide sequence