Strain Fitness in Escherichia coli BW25113 around b3335

Experiment: 3-methyl-1-butanol 1.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 1.25 vol%
3,462,593	+	yheK	b3333	0.56	+0.2
3,462,593	+	yheK	b3333	0.56	-0.7
3,462,621	-	yheK	b3333	0.58	+1.0
3,462,690	-	yheK	b3333	0.64	+0.5
3,462,690	-	yheK	b3333	0.64	-1.7
3,462,763	-	yheK	b3333	0.70	+0.5
3,462,763	-	yheK	b3333	0.70	-2.1
3,462,837	+	yheK	b3333	0.77	-2.1
3,462,837	+	yheK	b3333	0.77	+0.0
3,462,864	+	yheK	b3333	0.79	+0.7
3,462,870	+	yheK	b3333	0.80	+0.0
3,462,870	+	yheK	b3333	0.80	+1.0
3,462,878	-	yheK	b3333	0.80	-0.6
3,462,891	-	yheK	b3333	0.81	-0.5
3,462,905	+	yheK	b3333	0.83	-2.7
3,462,907	+	yheK	b3333	0.83	+0.5
3,462,915	+	yheK	b3333	0.83	-1.7
3,462,928	+	yheK	b3333	0.85	+0.4
3,462,928	-	yheK	b3333	0.85	+2.0
3,462,928	-	yheK	b3333	0.85	+0.3
3,462,945	+	yheK	b3333	0.86	+2.5
3,462,948	-	yheK	b3333	0.86	-1.3
3,462,956	-	yheK	b3333	0.87	-0.6
3,462,996	-				-0.4
3,462,996	-				+1.1
3,462,999	+				-1.7
3,463,002	-				-1.7
3,463,007	-				-1.5
3,463,022	+				-0.9
3,463,022	+				+0.9
3,463,030	-				-2.9
3,463,032	+				-2.0
3,463,032	+				-2.6
3,463,040	-				+0.5
3,463,040	-				+2.0
3,463,040	-				+1.0
3,463,040	-				-0.1
3,463,040	-				-1.9
3,463,076	+				+1.4
3,463,077	+				-1.1
3,463,081	-				-2.9
3,463,084	-				-1.1
3,463,085	-				+1.6
3,463,085	-				+0.2
3,463,085	-				-1.1
3,463,085	-				-1.6
3,463,095	-				-1.7
3,463,115	-				-0.9
3,463,161	-	pshM	b3334	0.12	+0.8
3,463,161	-	pshM	b3334	0.12	+2.1
3,463,215	+	pshM	b3334	0.24	-0.7
3,463,217	+	pshM	b3334	0.24	+0.7
3,463,217	+	pshM	b3334	0.24	+0.6
3,463,217	+	pshM	b3334	0.24	+1.8
3,463,223	-	pshM	b3334	0.26	-1.8
3,463,233	+	pshM	b3334	0.28	-0.7
3,463,252	+	pshM	b3334	0.32	-1.3
3,463,270	+	pshM	b3334	0.36	+0.6
3,463,294	+	pshM	b3334	0.41	+2.4
3,463,302	-	pshM	b3334	0.43	-2.2
3,463,302	-	pshM	b3334	0.43	+0.3
3,463,393	-	pshM	b3334	0.63	-0.4
3,463,420	-	pshM	b3334	0.68	+2.5
3,463,420	-	pshM	b3334	0.68	-0.8
3,463,459	+	pshM	b3334	0.77	+1.3
3,463,459	+	pshM	b3334	0.77	+2.2
3,463,470	+	pshM	b3334	0.79	-0.8
3,463,470	+	pshM	b3334	0.79	+0.2
3,463,486	-	pshM	b3334	0.83	+0.7
3,463,486	-	pshM	b3334	0.83	+0.4
3,463,488	-	pshM	b3334	0.83	+0.2
3,463,519	-				-1.9
3,463,533	-				+0.9
3,463,535	-				+0.1
3,463,544	+				+1.8
3,463,546	+				-2.3
3,463,552	-				-0.7
3,463,624	+				-2.4
3,463,624	+				+0.7
3,463,639	-	gspO	b3335	0.11	-1.2
3,463,639	-	gspO	b3335	0.11	+1.7
3,463,640	-	gspO	b3335	0.11	-3.0
3,463,640	-	gspO	b3335	0.11	+0.8
3,463,647	-	gspO	b3335	0.12	-0.5
3,463,654	+	gspO	b3335	0.13	+1.1
3,463,654	+	gspO	b3335	0.13	+3.4
3,463,696	-	gspO	b3335	0.19	+1.7
3,463,716	+	gspO	b3335	0.22	+2.1
3,463,716	+	gspO	b3335	0.22	+0.8
3,463,717	+	gspO	b3335	0.22	+1.3
3,463,719	+	gspO	b3335	0.23	+0.6
3,463,719	+	gspO	b3335	0.23	-1.3
3,463,720	+	gspO	b3335	0.23	-0.9
3,463,720	+	gspO	b3335	0.23	-0.1
3,463,725	-	gspO	b3335	0.24	-0.6
3,463,728	-	gspO	b3335	0.24	+1.7
3,463,759	+	gspO	b3335	0.29	+0.6
3,463,767	+	gspO	b3335	0.30	-0.1
3,463,768	-	gspO	b3335	0.30	-0.0
3,463,775	+	gspO	b3335	0.31	+0.1
3,463,775	+	gspO	b3335	0.31	+0.0
3,463,775	-	gspO	b3335	0.31	+0.8
3,463,775	-	gspO	b3335	0.31	+0.6
3,463,777	+	gspO	b3335	0.31	+0.0
3,463,812	-	gspO	b3335	0.36	-0.7
3,463,832	-	gspO	b3335	0.39	-0.5
3,463,844	-	gspO	b3335	0.41	+1.0
3,463,858	+	gspO	b3335	0.43	-0.6
3,463,878	+	gspO	b3335	0.46	-1.6
3,463,893	+	gspO	b3335	0.48	+1.6
3,463,918	+	gspO	b3335	0.52	+0.5
3,463,918	+	gspO	b3335	0.52	-0.3
3,463,922	+	gspO	b3335	0.53	-0.3
3,463,963	+	gspO	b3335	0.59	+2.7
3,463,963	+	gspO	b3335	0.59	-2.0
3,463,965	+	gspO	b3335	0.59	-1.0
3,463,971	-	gspO	b3335	0.60	-2.6
3,463,974	-	gspO	b3335	0.60	+4.5
3,463,991	-	gspO	b3335	0.63	-1.0
3,463,995	-	gspO	b3335	0.63	+0.9
3,464,030	-	gspO	b3335	0.69	+0.8
3,464,062	+	gspO	b3335	0.73	-2.2
3,464,062	+	gspO	b3335	0.73	+0.1
3,464,063	-	gspO	b3335	0.73	+0.7
3,464,072	-	gspO	b3335	0.75	+2.2
3,464,100	+	gspO	b3335	0.79	-0.3
3,464,121	-	gspO	b3335	0.82	-0.8
3,464,121	-	gspO	b3335	0.82	-0.7
3,464,125	-	gspO	b3335	0.83	+0.4
3,464,126	-	gspO	b3335	0.83	+2.0
3,464,158	+	gspO	b3335	0.87	-0.2
3,464,192	+				-1.1
3,464,210	+				+1.2
3,464,210	-				+0.1
3,464,215	+				+0.1
3,464,215	+				-2.0
3,464,218	-				-0.2
3,464,249	+				-1.2
3,464,257	+				-1.1
3,464,266	-				-2.2
3,464,266	-				+1.0
3,464,294	-				+0.3
3,464,296	-				+0.2
3,464,330	+	bfr	b3336	0.12	-1.2
3,464,338	-	bfr	b3336	0.14	+0.4
3,464,360	-	bfr	b3336	0.19	+0.3
3,464,360	-	bfr	b3336	0.19	-0.1
3,464,406	-	bfr	b3336	0.28	+0.4
3,464,423	+	bfr	b3336	0.32	-0.3
3,464,427	-	bfr	b3336	0.33	-0.4
3,464,427	-	bfr	b3336	0.33	-0.6
3,464,427	-	bfr	b3336	0.33	-0.4
3,464,438	-	bfr	b3336	0.35	-0.9
3,464,473	-	bfr	b3336	0.42	-0.4
3,464,485	-	bfr	b3336	0.45	+1.0
3,464,498	-	bfr	b3336	0.48	+1.0
3,464,502	-	bfr	b3336	0.48	-0.3
3,464,503	-	bfr	b3336	0.49	+0.2
3,464,504	+	bfr	b3336	0.49	+0.3
3,464,504	+	bfr	b3336	0.49	+0.7
3,464,517	+	bfr	b3336	0.52	-0.1
3,464,523	+	bfr	b3336	0.53	+2.1
3,464,523	+	bfr	b3336	0.53	-0.1
3,464,523	+	bfr	b3336	0.53	-0.9
3,464,572	+	bfr	b3336	0.63	-1.1
3,464,580	-	bfr	b3336	0.65	-0.5
3,464,587	+	bfr	b3336	0.66	-0.5
3,464,587	-	bfr	b3336	0.66	-2.8
3,464,587	-	bfr	b3336	0.66	+1.6
3,464,606	+	bfr	b3336	0.70	+0.7
3,464,614	-	bfr	b3336	0.72	+1.7
3,464,614	-	bfr	b3336	0.72	+0.5
3,464,618	-	bfr	b3336	0.73	-0.0
3,464,618	-	bfr	b3336	0.73	-3.2
3,464,618	-	bfr	b3336	0.73	+0.1
3,464,618	-	bfr	b3336	0.73	-1.1
3,464,618	-	bfr	b3336	0.73	-0.7
3,464,619	-	bfr	b3336	0.73	+1.2
3,464,623	+	bfr	b3336	0.74	-0.9
3,464,623	+	bfr	b3336	0.74	+2.0
3,464,623	-	bfr	b3336	0.74	+0.4
3,464,623	-	bfr	b3336	0.74	-1.9
3,464,626	-	bfr	b3336	0.74	-0.2
3,464,631	-	bfr	b3336	0.75	-0.2
3,464,641	-	bfr	b3336	0.78	-0.1
3,464,641	-	bfr	b3336	0.78	-2.0
3,464,681	-	bfr	b3336	0.86	+0.5
3,464,684	-	bfr	b3336	0.87	+0.4
3,464,706	-				-0.9
3,464,707	+				-1.2
3,464,707	+				-2.7
3,464,708	-				+1.0
3,464,729	-				+0.6
3,464,729	-				+0.9
3,464,769	-				-0.7
3,464,778	+				-2.8
3,464,778	+				-1.4
3,464,778	+				+0.2
3,464,786	-				-0.9
3,464,786	-				+0.3
3,464,786	-				+0.0
3,464,788	+				-1.5
3,464,788	+				+1.2
3,464,788	+				-0.0
3,464,788	+				-0.8
3,464,788	+				+2.1
3,464,788	+				+0.1
3,464,796	-				-0.3
3,464,796	-				-0.5
3,464,796	-				-0.0
3,464,809	-				-0.3
3,464,809	-				+0.9
3,464,815	+				+0.1
3,464,819	-				-0.1
3,464,853	+	bfd	b3337	0.17	+0.9
3,464,862	-	bfd	b3337	0.22	-1.8
3,464,874	+	bfd	b3337	0.28	-0.7
3,464,880	+	bfd	b3337	0.31	-0.9
3,464,880	+	bfd	b3337	0.31	-0.9
3,464,880	+	bfd	b3337	0.31	+1.5
3,464,880	+	bfd	b3337	0.31	-2.9
3,464,887	+	bfd	b3337	0.35	+1.3
3,464,888	-	bfd	b3337	0.35	-0.9
3,464,889	+	bfd	b3337	0.36	-2.8
3,464,892	-	bfd	b3337	0.37	-0.3
3,464,957	+	bfd	b3337	0.71	-1.1
3,464,958	+	bfd	b3337	0.71	+0.5
3,464,989	+	bfd	b3337	0.87	-0.8
3,464,999	-				+0.3
3,465,000	-				-0.3
3,465,009	+				+0.2
3,465,011	+				-0.7
3,465,011	+				+2.3
3,465,011	+				+0.5
3,465,011	+				+1.0
3,465,017	-				+0.4
3,465,017	-				-0.1
3,465,017	-				+2.5
3,465,017	-				+0.2
3,465,017	-				+1.0
3,465,017	-				-0.7
3,465,021	+				+3.2
3,465,023	+				+0.8
3,465,023	+				+1.8
3,465,132	-				+0.5
3,465,136	-				+1.5
3,465,160	+				+1.3
3,465,160	+				+0.2
3,465,167	+				+0.4
3,465,168	-				-0.8