Strain Fitness in Escherichia coli BW25113 around b3090

Experiment: 3-methyl-1-butanol 1.25 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 1.25 vol%
3,238,232	+	sstT	b3089	0.21	+0.3
3,238,233	-	sstT	b3089	0.21	-1.9
3,238,233	-	sstT	b3089	0.21	+0.5
3,238,246	+	sstT	b3089	0.22	+0.3
3,238,259	-	sstT	b3089	0.24	-1.9
3,238,259	-	sstT	b3089	0.24	+1.2
3,238,291	-	sstT	b3089	0.26	+0.2
3,238,357	+	sstT	b3089	0.31	-0.5
3,238,365	-	sstT	b3089	0.32	-1.2
3,238,374	+	sstT	b3089	0.33	-1.6
3,238,395	+	sstT	b3089	0.34	+0.9
3,238,397	+	sstT	b3089	0.35	-0.1
3,238,419	+	sstT	b3089	0.36	+1.3
3,238,430	-	sstT	b3089	0.37	-0.8
3,238,430	-	sstT	b3089	0.37	+0.7
3,238,484	+	sstT	b3089	0.42	-1.3
3,238,484	+	sstT	b3089	0.42	-1.3
3,238,492	-	sstT	b3089	0.42	+0.3
3,238,607	-	sstT	b3089	0.51	+1.8
3,238,607	-	sstT	b3089	0.51	+2.8
3,238,647	-	sstT	b3089	0.55	+0.4
3,238,702	+	sstT	b3089	0.59	+0.3
3,238,717	+	sstT	b3089	0.60	-2.4
3,238,717	+	sstT	b3089	0.60	-2.2
3,238,740	+	sstT	b3089	0.62	-1.9
3,238,748	-	sstT	b3089	0.63	-2.0
3,238,748	-	sstT	b3089	0.63	-0.7
3,238,748	-	sstT	b3089	0.63	-0.3
3,238,751	-	sstT	b3089	0.63	-0.7
3,238,792	-	sstT	b3089	0.66	+1.3
3,238,824	+	sstT	b3089	0.69	+0.6
3,238,825	+	sstT	b3089	0.69	-1.0
3,238,878	+	sstT	b3089	0.73	-1.3
3,238,878	+	sstT	b3089	0.73	+0.9
3,238,917	-	sstT	b3089	0.76	+0.0
3,238,937	+	sstT	b3089	0.78	+0.1
3,238,949	+	sstT	b3089	0.79	+0.1
3,239,032	+	sstT	b3089	0.86	+1.0
3,239,040	-	sstT	b3089	0.86	-0.3
3,239,040	-	sstT	b3089	0.86	+0.4
3,239,064	-	sstT	b3089	0.88	-1.5
3,239,064	-	sstT	b3089	0.88	-0.1
3,239,088	+				+0.1
3,239,100	+				-2.5
3,239,100	+				+0.0
3,239,102	-				+2.3
3,239,102	-				-0.0
3,239,152	-				+1.2
3,239,152	-				+2.1
3,239,348	+	ygjV	b3090	0.24	-0.3
3,239,360	+	ygjV	b3090	0.26	+1.3
3,239,368	+	ygjV	b3090	0.28	+1.3
3,239,400	+	ygjV	b3090	0.34	-0.3
3,239,400	+	ygjV	b3090	0.34	+2.2
3,239,424	-	ygjV	b3090	0.38	-0.8
3,239,487	+	ygjV	b3090	0.49	-1.6
3,239,526	-	ygjV	b3090	0.56	+2.0
3,239,544	+	ygjV	b3090	0.60	+0.6
3,239,544	+	ygjV	b3090	0.60	+1.4
3,239,552	-	ygjV	b3090	0.61	+0.0
3,239,585	+	ygjV	b3090	0.67	+0.5
3,239,585	+	ygjV	b3090	0.67	+1.1
3,239,653	+	ygjV	b3090	0.79	+0.4
3,239,741	+				+1.0
3,239,741	+				+0.3
3,239,807	+				+0.6
3,239,899	-				+0.1
3,239,899	-				+1.5
3,239,937	-				+0.3
3,239,973	+				+1.8
3,239,986	-				-0.5
3,240,082	-	uxaA	b3091	0.16	-2.1
3,240,094	-	uxaA	b3091	0.16	+0.2
3,240,094	-	uxaA	b3091	0.16	-0.7
3,240,096	+	uxaA	b3091	0.17	-1.4
3,240,096	+	uxaA	b3091	0.17	-0.8
3,240,099	-	uxaA	b3091	0.17	-1.6
3,240,106	+	uxaA	b3091	0.17	-0.5
3,240,114	-	uxaA	b3091	0.18	-0.2
3,240,128	+	uxaA	b3091	0.19	-0.3
3,240,166	+	uxaA	b3091	0.21	+0.4
3,240,166	+	uxaA	b3091	0.21	-1.6
3,240,176	+	uxaA	b3091	0.22	-0.4
3,240,176	+	uxaA	b3091	0.22	+0.7
3,240,255	-	uxaA	b3091	0.27	-1.0
3,240,262	-	uxaA	b3091	0.28	-0.3
3,240,277	+	uxaA	b3091	0.29	-2.5
3,240,277	+	uxaA	b3091	0.29	+0.6
3,240,277	+	uxaA	b3091	0.29	+0.3
3,240,281	+	uxaA	b3091	0.29	+0.9
3,240,347	-	uxaA	b3091	0.33	-0.5
3,240,347	-	uxaA	b3091	0.33	+1.4
3,240,347	-	uxaA	b3091	0.33	+0.6
3,240,359	+	uxaA	b3091	0.34	-0.4
3,240,359	+	uxaA	b3091	0.34	+0.7
3,240,415	-	uxaA	b3091	0.38	+2.1
3,240,415	-	uxaA	b3091	0.38	+1.0
3,240,454	+	uxaA	b3091	0.41	-0.6
3,240,454	+	uxaA	b3091	0.41	-0.2
3,240,470	-	uxaA	b3091	0.42	+0.4
3,240,556	-	uxaA	b3091	0.48	-0.8
3,240,614	-	uxaA	b3091	0.51	-0.6
3,240,661	-	uxaA	b3091	0.55	-3.2
3,240,661	-	uxaA	b3091	0.55	+3.8
3,240,743	+	uxaA	b3091	0.60	+0.7
3,240,743	+	uxaA	b3091	0.60	+1.7