Strain Fitness in Escherichia coli BW25113 around b3070
Experiment: 3-methyl-1-butanol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
3,213,016 | + | +2.7 | |||
3,213,058 | - | ygjF | b3068 | 0.14 | +1.7 |
3,213,069 | - | ygjF | b3068 | 0.16 | -0.5 |
3,213,276 | - | ygjF | b3068 | 0.57 | +1.8 |
3,213,334 | + | ygjF | b3068 | 0.68 | +0.9 |
3,213,334 | + | ygjF | b3068 | 0.68 | +2.1 |
3,213,449 | - | +0.5 | |||
3,213,497 | - | +0.4 | |||
3,213,497 | - | +0.6 | |||
3,213,692 | + | +0.2 | |||
3,213,789 | + | +0.4 | |||
3,213,868 | - | yqjH | b3070 | 0.16 | +0.2 |
3,213,983 | - | yqjH | b3070 | 0.31 | -2.5 |
3,213,995 | - | yqjH | b3070 | 0.32 | +0.8 |
3,213,998 | - | yqjH | b3070 | 0.33 | -1.7 |
3,213,998 | - | yqjH | b3070 | 0.33 | +2.2 |
3,214,144 | + | yqjH | b3070 | 0.52 | +0.3 |
3,214,168 | - | yqjH | b3070 | 0.55 | -0.5 |
3,214,254 | - | yqjH | b3070 | 0.66 | -0.3 |
3,214,289 | - | yqjH | b3070 | 0.71 | +1.4 |
3,214,334 | - | yqjH | b3070 | 0.76 | +0.5 |
3,214,334 | - | yqjH | b3070 | 0.76 | -0.1 |
3,214,347 | + | yqjH | b3070 | 0.78 | +0.2 |
3,214,383 | - | yqjH | b3070 | 0.83 | +0.6 |
3,214,408 | - | yqjH | b3070 | 0.86 | +3.5 |
3,214,440 | + | +0.4 | |||
3,214,448 | - | -1.6 | |||
3,214,485 | + | -2.3 | |||
3,214,511 | - | +2.0 | |||
3,214,655 | + | +0.2 | |||
3,214,907 | + | yqjI | b3071 | 0.17 | +1.1 |
3,214,923 | + | yqjI | b3071 | 0.20 | +2.4 |
3,214,931 | - | yqjI | b3071 | 0.21 | +0.5 |
3,215,115 | - | yqjI | b3071 | 0.50 | -0.4 |
3,215,115 | - | yqjI | b3071 | 0.50 | +0.6 |
3,215,152 | + | yqjI | b3071 | 0.56 | +0.5 |
3,215,152 | + | yqjI | b3071 | 0.56 | -0.2 |
3,215,224 | + | yqjI | b3071 | 0.68 | -1.1 |
3,215,341 | - | yqjI | b3071 | 0.87 | -0.7 |
3,215,341 | - | yqjI | b3071 | 0.87 | +2.7 |
3,215,343 | + | yqjI | b3071 | 0.87 | -0.2 |
3,215,383 | + | +1.3 | |||
3,215,512 | + | -2.6 | |||
3,215,513 | - | -2.6 |
Or see this region's nucleotide sequence