Strain Fitness in Escherichia coli BW25113 around b2187
Experiment: 3-methyl-1-butanol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 1.25 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,281,166 | - | yejK | b2186 | 0.20 | -1.2 |
| 2,281,166 | - | yejK | b2186 | 0.20 | -2.4 |
| 2,281,253 | + | yejK | b2186 | 0.29 | -0.9 |
| 2,281,255 | + | yejK | b2186 | 0.29 | -0.4 |
| 2,281,263 | + | yejK | b2186 | 0.30 | -1.7 |
| 2,281,263 | + | yejK | b2186 | 0.30 | +1.1 |
| 2,281,284 | - | yejK | b2186 | 0.32 | +1.7 |
| 2,281,284 | - | yejK | b2186 | 0.32 | +0.0 |
| 2,281,286 | + | yejK | b2186 | 0.32 | +0.2 |
| 2,281,294 | - | yejK | b2186 | 0.33 | -0.6 |
| 2,281,323 | - | yejK | b2186 | 0.36 | +0.3 |
| 2,281,325 | + | yejK | b2186 | 0.36 | +1.8 |
| 2,281,347 | + | yejK | b2186 | 0.38 | -0.3 |
| 2,281,377 | - | yejK | b2186 | 0.41 | +0.0 |
| 2,281,447 | + | yejK | b2186 | 0.48 | -0.6 |
| 2,281,456 | - | yejK | b2186 | 0.49 | +0.4 |
| 2,281,483 | + | yejK | b2186 | 0.52 | -0.1 |
| 2,281,512 | - | yejK | b2186 | 0.55 | +1.1 |
| 2,281,512 | - | yejK | b2186 | 0.55 | -0.9 |
| 2,281,780 | - | yejK | b2186 | 0.81 | +0.1 |
| 2,281,887 | + | +1.1 | |||
| 2,281,905 | - | +0.2 | |||
| 2,282,004 | - | -0.3 | |||
| 2,282,026 | + | -1.1 | |||
| 2,282,026 | + | -1.1 | |||
| 2,282,256 | + | yejL | b2187 | 0.46 | -0.9 |
| 2,282,304 | + | yejL | b2187 | 0.67 | -1.1 |
| 2,283,015 | + | yejM | b2188 | 0.35 | -1.3 |
| 2,283,060 | + | yejM | b2188 | 0.38 | -1.9 |
| 2,283,103 | - | yejM | b2188 | 0.40 | +0.3 |
| 2,283,140 | - | yejM | b2188 | 0.42 | +0.3 |
| 2,283,162 | + | yejM | b2188 | 0.43 | +1.0 |
| 2,283,194 | - | yejM | b2188 | 0.45 | +0.9 |
| 2,283,202 | + | yejM | b2188 | 0.46 | +1.3 |
| 2,283,202 | + | yejM | b2188 | 0.46 | -1.8 |
| 2,283,223 | + | yejM | b2188 | 0.47 | -1.6 |
| 2,283,223 | + | yejM | b2188 | 0.47 | +1.3 |
| 2,283,226 | + | yejM | b2188 | 0.47 | +1.2 |
| 2,283,279 | + | yejM | b2188 | 0.50 | -0.4 |
| 2,283,304 | - | yejM | b2188 | 0.51 | -0.2 |
| 2,283,324 | + | yejM | b2188 | 0.53 | +0.8 |
| 2,283,324 | + | yejM | b2188 | 0.53 | -0.4 |
Or see this region's nucleotide sequence