Strain Fitness in Escherichia coli BW25113 around b1602
Experiment: 3-methyl-1-butanol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-1-butanol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
1,672,027 | + | +4.4 | |||
1,672,082 | - | ydgG | b1601 | 0.14 | +2.1 |
1,672,082 | - | ydgG | b1601 | 0.14 | +4.0 |
1,672,095 | - | ydgG | b1601 | 0.15 | +3.2 |
1,672,095 | - | ydgG | b1601 | 0.15 | +0.6 |
1,672,095 | - | ydgG | b1601 | 0.15 | -0.7 |
1,672,102 | - | ydgG | b1601 | 0.16 | +4.5 |
1,672,106 | + | ydgG | b1601 | 0.16 | +2.3 |
1,672,151 | - | ydgG | b1601 | 0.21 | +3.6 |
1,672,157 | - | ydgG | b1601 | 0.21 | +2.9 |
1,672,291 | - | ydgG | b1601 | 0.34 | +2.4 |
1,672,365 | + | ydgG | b1601 | 0.41 | +3.5 |
1,672,365 | + | ydgG | b1601 | 0.41 | +3.9 |
1,672,413 | + | ydgG | b1601 | 0.46 | +2.1 |
1,672,481 | + | ydgG | b1601 | 0.53 | +3.6 |
1,672,668 | - | ydgG | b1601 | 0.71 | +2.1 |
1,672,698 | - | ydgG | b1601 | 0.74 | +1.5 |
1,672,698 | - | ydgG | b1601 | 0.74 | -1.3 |
1,672,796 | + | ydgG | b1601 | 0.83 | +3.3 |
1,673,042 | + | +0.7 | |||
1,673,095 | - | +0.4 | |||
1,673,102 | - | -0.4 | |||
1,673,145 | + | pntB | b1602 | 0.11 | -1.4 |
1,673,501 | - | pntB | b1602 | 0.36 | -1.1 |
1,673,579 | - | pntB | b1602 | 0.42 | +0.2 |
1,673,579 | - | pntB | b1602 | 0.42 | -2.1 |
1,673,667 | + | pntB | b1602 | 0.48 | -0.8 |
1,673,672 | + | pntB | b1602 | 0.49 | -2.2 |
1,673,672 | + | pntB | b1602 | 0.49 | -2.5 |
1,673,878 | + | pntB | b1602 | 0.63 | +0.9 |
1,673,878 | + | pntB | b1602 | 0.63 | -1.2 |
1,674,216 | + | pntB | b1602 | 0.88 | +2.0 |
1,674,370 | - | +1.3 | |||
1,674,385 | + | +0.3 | |||
1,674,511 | - | +0.2 | |||
1,674,521 | - | -0.3 | |||
1,674,521 | - | -0.6 | |||
1,674,523 | + | +0.6 | |||
1,674,583 | - | pntA | b1603 | 0.12 | +0.4 |
1,674,865 | + | pntA | b1603 | 0.31 | -0.3 |
1,674,894 | - | pntA | b1603 | 0.33 | +0.6 |
1,675,064 | + | pntA | b1603 | 0.44 | +0.7 |
1,675,064 | + | pntA | b1603 | 0.44 | -0.6 |
Or see this region's nucleotide sequence